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SRX2833145: RNA-Seq of Tursiops truncatus: epidermal cell line
1 ILLUMINA (Illumina HiSeq 2500) run: 30M spots, 3.8G bases, 1.6Gb downloads

Design: Total RNA extraction with Tri-Reagent, DNase digestion, Qiagen RNeasy Mini clean-up. NEBNext Ultra Directional RNA Library Prep Kit for Illumina, indexed with the NEBNext Multiplex Oligos for Illumina.
Submitted by: NOAA
Study: Toxicogenomic studies of an epidermal cell line from the common bottlenose dolphin
show Abstracthide Abstract
Remotely collected skin and blubber biopsies have been widely used to assess persistent organic pollutant concentrations in cetacean blubber to establish exposure. However, determining the effects of such exposure from the same remote biopsy sample is difficult. This project will use toxicogenomic methods to establish genes and pathways responsive to various contaminant classes in a dolphin epidermal cell line. The signatures identified in this study will be incorporated into the analysis of remote biopsies to assess exposure and effects of contaminants in cetaceans.
Sample:
SAMN07139300 • SRS2207892 • All experiments • All runs
Library:
Name: 10%WAF-24A
Instrument: Illumina HiSeq 2500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Runs: 1 run, 30M spots, 3.8G bases, 1.6Gb
Run# of Spots# of BasesSizePublished
SRR557481930,028,2233.8G1.6Gb2017-05-18

ID:
4069301

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