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SRX3273318: RNA-seq of Drosophila bipectinata: young adult male, whole body
1 ILLUMINA (Illumina HiSeq 2000) run: 24M spots, 2.5G bases, 1.5Gb downloads

Design: Paired end RNA-seq of young adult male flies for longevity study. Flies were fed with sugar yeast diet and kept at 25 degree C.
Submitted by: Harvard Medical School
Study: Comparative Transcriptomics across 14 Drosophila Species Reveals Signatures of Longevity
show Abstracthide Abstract
Lifespan varies dramatically among species, but the biological basis is not well understood. Previous studies in model organisms revealed the importance of nutrient sensing, mTOR, NAD/sirtuins and insulin/IGF1 signaling in lifespan control. By studying life history traits and transcriptomes of 14 Drosophila species differing more than 6-fold in lifespan, we explored expression divergence and identified genes and processes that correlate with longevity. These longevity signatures suggested that longer-lived flies up-regulate fatty acid metabolism, down-regulate neuronal system development and activin signaling, and alter dynamics of RNA splicing. Interestingly, these gene expression patterns resembled those of flies under dietary restriction and several other lifespan-extending interventions, although on the individual gene level, there was no significant overlap with genes previously reported to have lifespan extension effects. We experimentally tested the lifespan regulation potential of several candidate genes and found no consistent effects, suggesting that individual genes generally do not explain the observed longevity patterns. Instead, it appears that lifespan regulation across species is modulated by complex relationships at the system level represented by global gene expression.
Sample:
SAMN07774513 • SRS2584621 • All experiments • All runs
Library:
Name: dbip
Instrument: Illumina HiSeq 2000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: unspecified
Layout: PAIRED
Runs: 1 run, 24M spots, 2.5G bases, 1.5Gb
Run# of Spots# of BasesSizePublished
SRR616177824,039,4212.5G1.5Gb2017-12-31

ID:
4594422

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