GSM1209606: GFP (25h)-1; Populus trichocarpa; RNA-Seq - SRA

SRX335533: GSM1209606: GFP (25h)-1; Populus trichocarpa; RNA-Seq
1 ILLUMINA (Illumina Genome Analyzer IIx) run: 14.9M spots, 1G bases, 665.5Mb downloads

Submitted by: Gene Expression Omnibus (GEO)

Study: SND1 Transcription Factor-Directed Quantitative Functional Hierarchical Genetic Regulatory Network in Wood Formation in Populus trichocarpa

PRJNA215318 • SRP028843 • All experiments • All runs

show Abstracthide Abstract

We focused on RNA-seq-based full transcriptome responses to PtrSND1-B1 overexpression at 7, 12, and 25 h in stem defferentiating xylem (SDX) protoplasts Overall design: We transfected PtrSND1-B1 and sGFP into stem differentiating xylem protoplasts and performed RNA-seq to reveal the whole transcriptome.

Sample: GFP (25h)-1

SAMN02318110 • SRS470606 • All experiments • All runs

Organism: Populus trichocarpa

Library:

Instrument: Illumina Genome Analyzer IIx

Strategy: RNA-Seq

Source: TRANSCRIPTOMIC

Selection: cDNA

Layout: SINGLE

Construction protocol: stem defferentiating xylem protoplast isolation RNA libraries were prepared for sequencing using standard Illumina protocols

Experiment attributes:

GEO Accession: GSM1209606