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SRX3481859: GSM2893800: B1-1; Lactuca sativa; RNA-Seq
1 ILLUMINA (Illumina HiSeq 2000) run: 27.1M spots, 8.1G bases, 3Gb downloads

Submitted by: NCBI (GEO)
Study: Inflorescence development and the role of LsFT in regulating bolting in lettuce (Lactuca sativa L.)
show Abstracthide Abstract
Lettuce (Lactuca sativa L.) is one of the most important leafy vegetable that is consumed during its vegetative growth. The transition from vegetative to reproductive growth is induced by high temperature, which has significant economic effect on lettuce production. However, the progression of floral transition and the molecular regulation of bolting are largely unknown. Here we morphologically characterized the inflorescence development and functionally analyzed the FLOWERING LOCUS T (LsFT) gene during bolting regulation in lettuce. We described the 8 developmental stages during floral transition process. The expression of LsFT was negatively correlated with bolting in different lettuce varieties, and was promoted by heat treatment. Overexpression of LsFT could recover the late-flowering phenotype of ft-2 mutant. Knockdown of LsFT by RNA interference dramatically delayed bolting in lettuce, and failed to respond to high temperature. Therefore, this study dissects the process of inflorescence development and characterizes the role of LsFT in bolting regulation in lettuce. Overall design: mRNA profiles of SAM cells from bolting-sensitive line S39 and bolting-resistant line S24 at four critical developmental stage.
Sample: B1-1
SAMN08202506 • SRS2767682 • All experiments • All runs
Organism: Lactuca sativa
Library:
Instrument: Illumina HiSeq 2000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Laser capture microdissection was used to collect shoot cells at four time-course stage of these two lines.Total RNA from LCM samples was extracted using the Arcturus PicoPure RNA isolation Kit (Applied Biosystems) in conjunction with DNase I (Qiagen) for removing potential DNA contamination. The Target Amp 2-Round Aminoallyl-aRNA Amplification Kit 1.0 (Epicentre Biotechnologies) was used for RNA amplification following the manufacturer's protocol. RNA libraries were prepared for sequencing using Illumina HiSeq 2000
Experiment attributes:
GEO Accession: GSM2893800
Links:
Runs: 1 run, 27.1M spots, 8.1G bases, 3Gb
Run# of Spots# of BasesSizePublished
SRR638838427,065,3288.1G3Gb2018-02-15

ID:
4845949

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