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SRX3584216: GSM2929062: C_S2; Vitis riparia; RNA-Seq
1 ILLUMINA (Illumina HiSeq 2000) run: 45.7M spots, 4.6G bases, 2.8Gb downloads

Submitted by: NCBI (GEO)
Study: Shoot transcriptomic response is more sensitive to a 14 day water deficit than root transcriptomic response in Vitis riparia
show Abstracthide Abstract
Drought has become an increasingly important constraint on grapevine sustainability due to global climate change. Vitis riparia, the only grapevine native to the upper Midwest region of the United States, is widely used in scion and rootstock breeding; however, it is not considered drought tolerant. In this study, RNA-Seq data were generated from grapevine root/shoot under WD and well-watered (control (C)) conditions to compare root signaling and shoot responses to water deficit. Overall design: 36 grapevines were randomized into two groups: water deficit (WD) and well-watered control (C). Five days after randomization, differential water treatments began in replicates (3 vines/ replicate) of each treatment: WD received no water and C received 2 L of tap water each day. Root and shoot samples from the 14 d C and WD treatments were used for transcriptomic analysis, as this time point showed distinct physiological differences between treatments.
Sample: C_S2
SAMN08348584 • SRS2853357 • All experiments • All runs
Organism: Vitis riparia
Library:
Instrument: Illumina HiSeq 2000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Construction protocol: Total RNA was extracted from 100 mg of each replicate (n=3) frozen pulverized shoot tips as described by Mathiason K. et al. (2009). Total RNA was extracted from root tips (5 cm) of each replicate (n=3) using the Qiagen Rneasy Midi RNA isolation kit (Qiagen, 75144) according to manufacturer protocol. Total RNA samples were sent to Cornell University Life Sciences Core Laboratories and single-end sequences were generated using an Illumina HiSeq 2000.
Experiment attributes:
GEO Accession: GSM2929062
Links:
Runs: 1 run, 45.7M spots, 4.6G bases, 2.8Gb
Run# of Spots# of BasesSizePublished
SRR649489045,688,1394.6G2.8Gb2018-12-16

ID:
4969718

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