GSM2967018: root control 1; Solanum lycopersicum; RNA-Seq - SRA

SRX3615325: GSM2967018: root control 1; Solanum lycopersicum; RNA-Seq
2 ILLUMINA (Illumina HiSeq 2500) runs: 25.2M spots, 5.1G bases, 3.2Gb downloads

Submitted by: NCBI (GEO)

Study: Transcription Factor-Mediated Control of Anthocyanin Biosynthesis in Vegetative Tissues of Tomato

PRJNA432035 • SRP131668 • All experiments • All runs

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DEX inducible expression system for Rosea1 and Delila transcription factors was introduced in tomato. Seedlings and callus tissues were induced by DEX. RNA of induced and uniniduced roots and calli was isolated after 3 and 24h. Overall design: DEX inducible expression system for Rosea1 and Delila transcription factors was introduced in tomato. Seedlings and callus tissues were induced by DEX. RNA of induced and uniniduced roots and calli was isolated after 3 and 24h.

Sample: root control 1

SAMN08428589 • SRS2882449 • All experiments • All runs

Organism: Solanum lycopersicum

Library:

Instrument: Illumina HiSeq 2500

Strategy: RNA-Seq

Source: TRANSCRIPTOMIC

Selection: cDNA

Layout: PAIRED

Construction protocol: RNeasy plant minikit (Qiagen) TruSeq Stranded mRNA Sample Preparation Protocol (Illumina) Equimolar amounts of libraries were pooled and diluted towards 6pM concentrations for paired end clustering on one lanes of a flow cell V4 (Illumina) and analyzed paired end on a HiSeq2500 instrument using a 126,7,126 flow cycle pattern.

Experiment attributes:

GEO Accession: GSM2967018

Links:

NCBI link: NCBI Entrez (gds)

Runs: 2 runs, 25.2M spots, 5.1G bases, 3.2Gb

Run	# of Spots	# of Bases	Size	Published
SRR6627624	12,574,610	2.5G	1.6Gb	2018-01-31
SRR6627625	12,645,125	2.6G	1.6Gb	2018-01-31

ID:: 5010022

SRA

Sequence Read Archive

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