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SRX3677152: RNA-Seq of Dermacentor variabilis: unfed, virgin adult male 1st legs
1 ILLUMINA (Illumina HiSeq 2500) run: 53M spots, 10.6G bases, 6.7Gb downloads

Design: Poly(A) mRNAs were isolated, separately, from 2 g of total RNA collected from the 1st legs, and 2 g of total RNA collected from the 4th legs for library preparation and barcoding. The mRNAs were fragmented and cDNA synthesized, amplified, digested, and purified utilizing Illumina TruSeq chemistry protocols (Illumina, San Diego, CA, USA). The purified cDNA fragments generated were ligated with adaptor constructs creating the 1st and 4th leg cDNA libraries. In preparation for sequencing, the 1st and 4th leg cDNA libraries were barcoded with a 6 bp barcode (GCCAAT or CTTGTA) to distinguish the sequencing data generated from each library. The barcoded 1st and 4th leg cDNA libraries were hybridized onto one Illumina Hiseq flow cell for cBOT (Illumina, San Diego, CA, USA) cluster generation and sequencing (paired-end, 2 100 bp; total 200 cycles). Two raw data sets of sequencing outputs, one per library, were generated using the Illumina software assembler (Illumina, San Diego, CA, USA)
Submitted by: North Carolina State University
Study: Unfed, virgin adult male Dermacentor variabilis 1st and 4th leg transcriptomes; comparative transcriptomics and the tick Haller's organ
show Abstracthide Abstract
Ticks are major vectors of human and animal diseases and a significant nuisance problem. The American dog tick, Dermacentor variabilis, which is the focus of this project is the vector of Rocky Mountain spotted fever in the US, and an excellent model, in part due to its large size, ease of rearing and the background research on its development. Critical to disease transmission is host recognition, blood feeding, pheromone detection, mating and reproduction. It has long been recognized that olfaction is a critical aspect of these processes, and extensive studies have been conducted on olfaction including functional transcriptomics in other blood feeding arthropods like mosquitoes. However, essentially nothing is known about olfaction at the molecular level in ticks. The project goals are to develop the first transcriptome to a tick Haller''s organ and to conduct gene expression analysis and RNAi screening to identify targets (odorant binding proteins, receptors, catabolic systems and other proteins) for future mechanistic studies of tick olfaction and the development of next generation control strategies for ticks. We expect the work proposed will greatly increase our knowledge of the molecular biology of tick olfaction which is currently in its infancy and stimulate future work on chemoreception in this important arthropod group. Future research will include gustatory receptors in the tick palps and their function in tick development and repellency.
Sample: RNA-Seq of unfed virgin adult male Dermacentor variabilis 1st and 4th legs
SAMN08513157 • SRS2937850 • All experiments • All runs
Library:
Name: DVM1
Instrument: Illumina HiSeq 2500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: PCR
Layout: PAIRED
Runs: 1 run, 53M spots, 10.6G bases, 6.7Gb
Run# of Spots# of BasesSizePublished
SRR670297452,979,79510.6G6.7Gb2018-02-09

ID:
5082662

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