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SRX3989609: RNA-Seq of IMA exposed Daphnia magna neonates
1 ILLUMINA (Illumina HiSeq 2000) run: 12.2M spots, 2.4G bases, 1.6Gb downloads

Design: Illumina TruSeq stranded mRNA kit
Submitted by: University of Massachusetts Boston
Study: Anticancer drug exposures on an aquatic crustacean
show Abstracthide Abstract
The use of anticancer drugs in chemotherapy is increasing leading to growing environmental concentrations of imatinib mesylate (IMA), cisplatinum (CDDP), etoposide (ETP), and 5-flourouracil (5-FU) in aquatic systems. Previous studies have shown that these anticancer drugs cause DNA damage in the crustacean Daphnia magna at low, environmentally relevant concentrations. To explore the mechanism of action of these compounds and the downstream effects of DNA damage on their growth and development at a sensitive life stage, we exposed D. magna neonates to low level concentrations equivalent to those that elicit DNA damage (i.e., IMA: 2000 ng/L, ETP: 300 ng/L, CDDP: 10 ng/L, 5-FU: 39 and 500 ng/L) and performed transcriptomic analysis using an RNAseq approach.
Sample: IMA exposure 3
SAMN08974739 • SRS3214069 • All experiments • All runs
Organism: Daphnia magna
Library:
Name: 15A_IM3
Instrument: Illumina HiSeq 2000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Runs: 1 run, 12.2M spots, 2.4G bases, 1.6Gb
Run# of Spots# of BasesSizePublished
SRR705864812,186,2772.4G1.6Gb2018-04-24

ID:
5457605

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