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SRX4221407: GSM3192062: NBH_PCB_1; Fundulus heteroclitus; RNA-Seq
1 ILLUMINA (Illumina HiSeq 2000) run: 31.1M spots, 6.3G bases, 3.7Gb downloads

Submitted by: NCBI (GEO)
Study: Population specific and shared transcriptional responses of fish embryos exposed to PCB153
show Abstracthide Abstract
Killifish (Fundulus heteroclitus) inhabiting the New Bedford Harbor (NBH) Superfund Site have evolved resistance to the toxic and biochemical effects of non-ortho (dioxin-like) polychlorinated biphenyls (DL-PCBs) and other compounds that act via the aryl hydrocarbon receptor (AHR) signaling pathway. However, the majority of PCBs in NBH are ortho-substituted (non-DL) PCBs (o-PCBs), and the impacts of these o-PCBs on fish populations are not well understood. To determine whether the NBH killifish population has adapted to o-PCBs, we performed a series of experiments involving exposure to killifish embryos and adults from NBH and a reference site (Scorton Creek; SC) to 2,2',4,4',5,5'-hexachlorobiphenyl (PCB-153), a model o-PCB. PCB-153 was not acutely embryotoxic to developing F2 killifish embryos (SC or NBH) at concentrations up to 28 µM. RNA-seq showed that SC embryos exposed to PCB-153 (28 µM for 6 hr at 10 days post fertilization) had changes in the expression of genes involved in glucose homeostasis. However, NBH embryos were much less sensitive to these effects of PCB-153. When adult killifish from SC and NBH were exposed to PCB-153 (20 mg/kg) and sampled 3 days later for gene expression, many more genes were affected in forebrains of SC fish than in NBH fish, in a sex-specific manner. Together, these results demonstrate that NBH killifish have evolved reduced sensitivity to o-PCBs, suggesting complex adaptation to chemical mixtures at a Superfund site. Overall design: We sequenced 5 pools of killifish embryos (biological replicates) exposed to DMSO and PCB153.
Sample: NBH_PCB_1
SAMN09429842 • SRS3422081 • All experiments • All runs
Library:
Instrument: Illumina HiSeq 2000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Total RNA from embryos was isolated using BioRad Aurum kit. Library construction and sequencing were done at Tufts University Core facility. Libraries were prepared using Illumina library preparation kit.
Experiment attributes:
GEO Accession: GSM3192062
Links:
Runs: 1 run, 31.1M spots, 6.3G bases, 3.7Gb
Run# of Spots# of BasesSizePublished
SRR734802631,054,1576.3G3.7Gb2018-06-18

ID:
5708394

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