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SRX4508558: GSM3319085: Branchial_Heart_Ventricle_2; Octopus bimaculoides; RNA-Seq
4 ILLUMINA (Illumina HiSeq 3000) runs: 7M spots, 1.4G bases, 661.3Mb downloads

Submitted by: NCBI (GEO)
Study: Cephalopod Neurogenomics
show Abstracthide Abstract
Transcriptome profiling of Octopus nervous systems and associated structures provides insights into the molecular organization of neuronal complexity and behavioral flexibility. RNA-seq also highlights molecular diversity in cell signaling pathways. Overall design: Ninety five transcriptomes from Octopus bimaculoides tissues and cells are included. Sixty one transcriptomes are neuronal tissues, including individual lobes of the brain, the optic lobes, stellate ganglia, and arm cords. There are at least three replicates of each neural tissue, except for the subesophageal lobes, which wwas divided into anterior, middle, and posterior regions with a single replicate of each. Thirty four transcriptomes are from non-neuronal tissues including representatives from circulatory, digestive, endocrine, reproductive, integumentary, and visual systems/tissues. All transcriptomes were run on Illumina platforms: either HiSeq3000 or NextSeq500
Sample: Branchial_Heart_Ventricle_2
SAMN09766162 • SRS3628342 • All experiments • All runs
Library:
Instrument: Illumina HiSeq 3000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: For tissue transcriptomes, RNA was extracted from whole tissues and subsequently converted to cDNA. Single neurons were processed without RNA extraction to cDNA. cDNA was constructed with reverse transcriptase, sequencing library was made using NEBNEXT Ultra I or II Library Construction for Illumina.
Experiment attributes:
GEO Accession: GSM3319085
Links:
Runs: 4 runs, 7M spots, 1.4G bases, 661.3Mb
Run# of Spots# of BasesSizePublished
SRR76453781,904,664384.7M175.5Mb2021-01-31
SRR76453791,794,858362.6M167.6Mb2021-01-31
SRR76453801,573,040317.8M153.8Mb2021-01-31
SRR76453811,719,716347.4M164.4Mb2021-01-31

ID:
6106221

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