Whole-genome sequencing, de novo assembly, and RNAseq analysis reveal... - SRA

SRX4663394: Whole-genome sequencing, de novo assembly, and RNAseq analysis reveals unique features of the kidney in the American black bear
1 ILLUMINA (NextSeq 500) run: 62.1M spots, 9.4G bases, 3.2Gb downloads

Design: RNA isolation and sequencing

Submitted by: Jackson Laboratory

Study: Whole-genome sequencing, de novo assembly, and RNAseq analysis reveals unique features of the kidney in the American black bear (Ursus americanus)

PRJNA319796 • SRP075217 • All experiments • All runs

show Abstracthide Abstract

we have performed high-throughput sequencing and a de novo assembly of the complete genome using both genomic DNA and RNA isolated from kidneys of American black bears (Ursus americanus) and made a first comparison of transcription profiles between kidneys collected in the spring (within weeks of waking up from hibernation) and the fall.

Sample:

SAMN10023699 • SRS3758605 • All experiments • All runs

Organism: Ursus americanus

Library:

Name: JAX103_Spring_RNA_Bear

Instrument: NextSeq 500

Strategy: RNA-Seq

Source: TRANSCRIPTOMIC

Selection: unspecified

Layout: PAIRED

Runs: 1 run, 62.1M spots, 9.4G bases, 3.2Gb