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SRX4718662: RNA-seq of Protopterus annectens: juvenile tail
1 ILLUMINA (Illumina HiSeq 2500) run: 10.2M spots, 3.1G bases, 1.3Gb downloads

Design: Total RNA extraction from non-regenerating tail tissue and regenerating tail at1, 14 or 21 days post-amputation for transcriptome was achieved using TRIzolReagent (Life Technologies) according to the manufacturers protocol. RNAsamples were further purified using RNeasy Mini Kit (Quiagen) and treated withDNaseI (Quiagen), according to the manufacturers protocol. Total RNA wasreverse transcribed using the SuperScript III First-Strand Synthesis SuperMix(Life Technologies). A de novo reference transcriptome was produced andtranscript abundance was estimated based on twelve independent Illumina 100bp paired-end runs, three runs from each library condition. Library preparationwas done using BiooScientific Kits (NEXTflex Poly(A) Beads andNEXTFLEX Rapid Directional qRNA-Seq Library Prep Kit).
Submitted by: Universidade Federal do Para
Study: Protopterus annectens breed:eukaryotic Transcriptome or Gene expression
show Abstracthide Abstract
Spinal cord is the major conduit by which information connects between bodyand brain, so an injury in mammals can result in irreversible damages. Amongvertebrates, salamanders and frog tadpoles are the only ones that successfullyregenerate their tails. Lungfishes, the sister group to tetrapods, have aregenerative capacity comparable to salamanders, regenerating a complete tailwith vertebrae and spinal cord. However, very little is known regarding thisprocess. Aiming to understand the mechanisms underlying lungfish tailregeneration, we used the African lungfish as a study object. The RNAsequencing experiments on non-regenerating tail and regenerating tail atdifferent stages of regeneration will help to reveal the genetic basis responsiblefor this regenerative process. We believe that our results will help to establishlungfish as valuable model for future research on bone marrow regeneration invertebrates.
Sample:
SAMN10093163 • SRS3804045 • All experiments • All runs
Library:
Name: 14dpa_3
Instrument: Illumina HiSeq 2500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: RT-PCR
Layout: PAIRED
Runs: 1 run, 10.2M spots, 3.1G bases, 1.3Gb
Run# of Spots# of BasesSizePublished
SRR788002410,180,4573.1G1.3Gb2019-10-19

ID:
6386524

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