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SRX472080: Haliotis rufescens, Fort Ross; Sonoma, CA, 5 m depth, 17 Oct 2011 : FR81
1 ILLUMINA (Illumina HiSeq 2000) run: 18.9M spots, 963.9M bases, 533.3Mb downloads

Design: Illumina TruSeq
Submitted by: University of Gothenburg
Study: Haliotis rufescens Variation
show Abstracthide Abstract
Toxic spills, hypoxia, disease outbreaks and toxin-producing algal blooms are all possible causes of mass mortality events, but in many cases it can be difficult to pinpoint the cause of death. Here we present a new approach that we name “forensic genomics”, combining field surveys, toxin testing and genomic scans. Forensic genomics queries allele frequencies of surviving animals for signatures of agents causing mass mortality and, where genetic diversity is high, is uniquely suited to identify natural selection in action. As a proof of concept, we use this approach to investigate the causes of an invertebrate mass mortality event, and its genetic effects on an abalone population. Our results support that a harmful algal bloom producing a yessotoxin was a major causative agent to the event.
Sample: Haliotis rufescens FR81
SAMN02639990 • SRS558639 • All experiments • All runs
Library:
Name: FR81
Instrument: Illumina HiSeq 2000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: PolyA
Layout: SINGLE
Spot descriptor:
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Runs: 1 run, 18.9M spots, 963.9M bases, 533.3Mb
Run# of Spots# of BasesSizePublished
SRR117099018,900,103963.9M533.3Mb2014-04-01

ID:
652570

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