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SRX4948663: GSM3449811: 4dpi-Young_rep2; Mustela putorius furo; RNA-Seq
1 ILLUMINA (Illumina HiSeq 2500) run: 25.3M spots, 5.1G bases, 2.3Gb downloads

Submitted by: NCBI (GEO)
Study: Ferret animal model of severe fever with thrombocytopenia syndrome phlebovirus for human lethal infection and pathogenesis
show Abstracthide Abstract
Severe fever with thrombocytopenia syndrome phlebovirus (SFTSV), listed in the WHO most dangerous pathogens, has 12-30% fatality rates with a characteristic thrombocytopenia syndrome. With a majority of clinically diagnosed SFTSV patients older than ~50 years, age is a critical risk factor for SFTSV morbidity and mortality. Here, we report an age-dependent ferret model of SFTSV infection and pathogenesis that fully recapitulates the clinical manifestations of human infections. While young adult ferrets (=2 years old) did not show any clinical symptoms and mortality, SFTSV-infected aged ferrets (=4 years old) demonstrated severe thrombocytopenia, reduced white blood cells, and high fever with 93% mortality rate. Moreover, significantly higher viral load was observed in aged ferrets. Transcriptome analysis of SFTSV-infected young ferrets revealed strong interferon-mediated anti-viral signaling, whereas inflammatory immune responses were markedly upregulated and persisted in aged ferrets. Thus, this immunocompetent age-dependent ferret model should be useful for anti-SFTSV therapy and vaccine development. Overall design: Two groups of young adults (20-24 months, =2Y) and aged ferrets (48-50 months), =4 Y) were inoculated via the IM route with 107.6 TCID50 of the SFTSV CB1/2014 strain. PBMCs were isolated at 2 and 4 dpi from each group of ferrets (n=3) by density gradient centrifugation using Ficoll-Paque Plus according to the manufacture's protocol.
Sample: 4dpi-Young_rep2
SAMN10340896 • SRS3990960 • All experiments • All runs
Library:
Instrument: Illumina HiSeq 2500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Total RNA was extracted from PBMCs of mock PBS control- and SFTSV CB1/2014-infected ferrets using RNeasy Micro Kit (Qiagen) according to the manufacturer's protocol. RNA quantity was assessed by spectrophotometry using Nanodrop 1000 (Thermo Fisher Scientific). RNA libraries were prepared using TruSeq Stranded mRNA Sample Prep Kit (Illumina). About 50 millions of paired-end reads with 100-nucleotide length were generated for each sample and sequenced on Illumina Hi-Seq 2500 system
Experiment attributes:
GEO Accession: GSM3449811
Links:
Runs: 1 run, 25.3M spots, 5.1G bases, 2.3Gb
Run# of Spots# of BasesSizePublished
SRR812745525,311,9845.1G2.3Gb2018-10-31

ID:
6676839

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