RNA-Seq of Triticum dicoccoides: Taiyiba, sample 7-12, 2008 - SRA

SRX5094173: RNA-Seq of Triticum dicoccoides: Taiyiba, sample 7-12, 2008
1 ILLUMINA (Illumina HiSeq 2500) run: 6.9M spots, 1.7G bases, 675Mb downloads

Design: RNA: Qiagen RNEasy Plant Mini, Library: Lexogen SENSE mRNA-Seq v2, Seq: Single HiSeq lane with SBS v4 2x125 bases

Submitted by: Agriculture & Agri-Food Canada

Study: Triticum dicoccoides Genome Sequencing Using RNA Seq

PRJNA507457 • SRP172446 • All experiments • All runs

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Ten populations of wild emmer (Triticum dicoccoides) were collected 28 years apart. Single nucleotide polymorphisms (SNPs) were detected using RNA Seq sequences. Focus was placed on those SNPs that were deleterious and associated with the two sample times to examine the change in diversity over time.

Sample: The tissue originated from seed that was increased once from seed collected either in 1980 or 2008.

SAMN10500401 • SRS4105782 • All experiments • All runs

Organism: Triticum dicoccoides

Library:

Name: W07-12_S32

Instrument: Illumina HiSeq 2500

Strategy: RNA-Seq

Source: TRANSCRIPTOMIC

Selection: PolyA

Layout: PAIRED

Runs: 1 run, 6.9M spots, 1.7G bases, 675Mb

Run	# of Spots	# of Bases	Size	Published
SRR8279263	6,891,204	1.7G	675Mb	2020-07-01

ID:: 6870635

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Sequence Read Archive

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