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SRX519867: GSM1370398: Methyl Jasmonate treated root 2; Populus tremula x Populus alba; RNA-Seq
1 ILLUMINA (Illumina HiSeq 2000) run: 47.1M spots, 9.4G bases, 5.2Gb downloads

Submitted by: Gene Expression Omnibus (GEO)
Study: Effect of Methyl jasmonate of the Poplar root transcriptome
show Abstracthide Abstract
Illumina HiSeq technology was used to generate mRNA profiles from Populus tremula x alba INRA 717-1B4 roots treated with Methyl jasmonate. Samples were harvested after two weeks either from untreated control roots or from Methyl jasmonate treated roots. Paired-end (2X100bp) reads were generated and aligned to the Populus trichocarpa (http://www.phytozome.net/poplar.php) using CLC Genomics Workbench 6. Overall design: mRNA profiles from Populus tremula x alba INRA 717-1B4 roots treated with Methyl jasmonate as well as from control roots were generated by paired-end (2X100bp) Illumina HiSeq sequencing. Four samples were sequenced per lane, two biological replicates per treatment.
Sample: Methyl Jasmonate treated root 2
SAMN02729206 • SRS593738 • All experiments • All runs
Library:
Instrument: Illumina HiSeq 2000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Total RNA was isolated using RNaesy Plant Mini Kit (Qiagen). RNA integrity was checked using Experion RNA Analysis Kit (Biorad) cDNA libraries were prepared for sequencing using standard Illumina protocols by Beckman Coulter Genomics (Danvers,MA, USA)
Experiment attributes:
GEO Accession: GSM1370398
Links:
External link:
Runs: 1 run, 47.1M spots, 9.4G bases, 5.2Gb
Run# of Spots# of BasesSizePublished
SRR124686847,115,2589.4G5.2Gb2014-04-22

ID:
719514

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