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SRX533495: GSM1379356: A4; Culex quinquefasciatus; RNA-Seq
1 ILLUMINA (Illumina HiSeq 2000) run: 11.7M spots, 575.1M bases, 350.6Mb downloads

Submitted by: Gene Expression Omnibus (GEO)
Study: Culex pipiens pallens and Cx. p. quinquefasciatus with different resistant level
show Abstracthide Abstract
Culex pipiens pallens and Cx. p. quinquefasciatus are important vectors of many diseases, such as West Nile fever and lymphatic filariasis. The widespread use of insecticides to control these disease vectors and other insect pests has led to insecticide resistance becoming common in these species. High throughput screening using SSH and specific microarray platforms was thought to have identified some resistance-related genes. However, limitations of these methods meant that only a few hundred of the many thousand genes could be screened. It wasn’t until the sequencing of the Cx. quinquefasciatus genome in 2010 that it became possible to screen all 18.9 thousand genes in the mosquito genome for anti-insecticidal activity. We used high throughout Illumina sequencing to identify hundreds of Cx. p. pallens and Cx. p. quinquefasciatus genes that were differentially expressed in response to pesticide exposure. The identification of these genes is a vital first step for more detailed investigation of the molecular mechanisms involved in insecticide resistance in mosquitoes. In this study, larvae of Cx. pipiens pallens and Cx. pipiens quinquefasciatus were collected from field and transported to the laboratory and reared to adulthood to get F1 generation. Then, half of the F1 generation was conducted to pesticide bioassay. RNA extraction and Illumina sequencing were undertaken in another half of the F1 generation. Therefore, Samples used in Illumina sequencing did not contact any insecticides. Overall design: Twelve Cx. pipiens pallens and Cx. pipiens quinquefasciatus lavae were undertaken Illumina RNA sequencing.
Sample: A4
SAMN02746141 • SRS602297 • All experiments • All runs
Library:
Instrument: Illumina HiSeq 2000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Construction protocol: Total RNA of 30 mosquito larvae of each was extracted using the TRIzol. Total RNA samples were pooled and 10 mg from each pool was used to isolate poly(A) mRNA and to prepare non-directional Illumina RNA-Seq libraries. RNA libraries were prepared for sequencing using standard Illumina protocols
Experiment attributes:
GEO Accession: GSM1379356
Links:
External link:
Runs: 1 run, 11.7M spots, 575.1M bases, 350.6Mb
Run# of Spots# of BasesSizePublished
SRR127173711,736,535575.1M350.6Mb2015-07-22

ID:
734052

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