RNA-Seq of octopus vulgaris:paralarva 10 dph - SRA

SRX5984960: RNA-Seq of octopus vulgaris:paralarva 10 dph
1 ILLUMINA (Illumina HiSeq 4000) run: 54M spots, 16.3G bases, 6.7Gb downloads

Design: Double-stranded cDNA libraries were prepared using the Kapa Stranded mRNA-seq kit (KK8420) following the manufacturer instructions with a mean library insert size of 201300 bp. Briefly, RNA samples were first purified with two oligo-dT selection (poly(A) enrichment using oligodT beds), and then fragmented and reverse transcribed into double-stranded complementary cDNA. A total of 12 libraries were paired-ended sequenced (2 150 bp) in an Illumina HiSeq 4000 platform from individual samples.

Submitted by: IIM-CSIC

Study: RNA sequencing of Octopus vulgaris paralarvae

PRJNA547720 • SRP200729 • All experiments • All runs

show Abstracthide Abstract

Rearing Octopus vulgaris under captivity is currently challenged by massive mortalities previous to their juvenile stage due to nutritional and environmental factors. Dissecting the genetic basis and regulatory mechanism behind this mortality requires genomic background knowledge. A transcriptomic sequencing of 10 dph octopus paralarvae from different experimental conditions was constructed via RNA-seq.

Sample:

SAMN11975252 • SRS4890481 • All experiments • All runs

Organism: Octopus vulgaris

Library:

Name: CZ1_16768_GTGAAA

Instrument: Illumina HiSeq 4000

Strategy: RNA-Seq

Source: TRANSCRIPTOMIC

Selection: cDNA

Layout: PAIRED

Runs: 1 run, 54M spots, 16.3G bases, 6.7Gb

Run	# of Spots	# of Bases	Size	Published
SRR9214247	53,960,858	16.3G	6.7Gb	2019-11-19

ID:: 8021266

SRA

Sequence Read Archive

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