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SRX6894604: GSM4094238: Woodchuck_8; Marmota monax; RNA-Seq
1 ILLUMINA (Illumina HiSeq 2500) run: 71M spots, 17.9G bases, 5.7Gb downloads

Submitted by: NCBI (GEO)
Study: Genome sequence of the Eastern woodchuck (Marmota monax) – a preclinical animal model for chronic hepatitis B
show Abstracthide Abstract
Gene expression profiling by RNAseq of lung, thymus, heart, pancreas, kidney, spleen and liver tissues from woodchuck as a preclinical animal model for chronic hepatitis B Overall design: In total 20 untreated reference samples from 6 different organs
Sample: Woodchuck_8
SAMN12828067 • SRS5427499 • All experiments • All runs
Organism: Marmota monax
Library:
Instrument: Illumina HiSeq 2500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Sequencing libraries were prepared from either 100 ng or one µg of total RNA using the Illumina TruSeq RNA Sample preparation Kit v2 according to manufacturer's instructions. Sequencing libraries were quantified using the Kapa Library Quantification kit (Kapa Biosystems) and quality controlled by capillary electrophoresis on a Bioanalyzer using DNA 1000 chips (Agilent Technologies). Libraries were sequenced on a HiSeq2500 sequencer (Illumina) for 2 x 125 cycles using version 3 cluster generation kits and version 3 sequencing reagents (Illumina). The PhiX control library (Illumina) was spiked into each sample (at 1%) as a sequencing control.
Experiment attributes:
GEO Accession: GSM4094238
Links:
Runs: 1 run, 71M spots, 17.9G bases, 5.7Gb
Run# of Spots# of BasesSizePublished
SRR1017292971,010,13517.9G5.7Gb2019-09-26

ID:
9071948

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