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SRX7449193: GSM4232577: 24h-Model; Anas platyrhynchos; RNA-Seq
1 ILLUMINA (Illumina HiSeq 2000) run: 20.4M spots, 6.1G bases, 2.6Gb downloads

Submitted by: NCBI (GEO)
Study: Transcriptomic profiles of gene expression of brain tissue in duck in response to Tembusu virus infection
show Abstracthide Abstract
We used high-throughput RNA-sequencing technology to reveal the transcriptome profile of DTMUV-infected duck brain tissue. Overall design: Twenty-four 10-day-old SPF ducks (Harbin Veterinary Research Institute, Harbin, China) were randomly divided into two groups. The ducks were raised in separated negative-pressure isolators. The challenge group was intramuscularly inoculated with 0.5 ml of 105.5 TCID50/ ml TMUV JM strain. The control group was inoculated with an equal amount of sterile PBS. At 12, 24, and 48 hours post infection (hpi), four ducked were randomly selected from each group for euthanasia. The brain tissues were collected and pooled for NGS sequencing.
Sample: 24h-Model
SAMN13689809 • SRS5893490 • All experiments • All runs
Library:
Instrument: Illumina HiSeq 2000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: The brain tissues were grinded in liquid nitrogen.Total RNA of each sample was extracted and purified using RNeasy Mini Kit (Qiagen) and RNase-Free DNase Set (QIAGEN, Germany). RNA concentration was determined by NanoDrop ND-2000 (Thermo Fisher Scientific Inc., USA). RNA libraries were prepared for sequencing using standard Illumina protocols
Experiment attributes:
GEO Accession: GSM4232577
Links:
Runs: 1 run, 20.4M spots, 6.1G bases, 2.6Gb
Run# of Spots# of BasesSizePublished
SRR1077527520,417,8676.1G2.6Gb2020-04-29

ID:
9741082

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