U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SRX7898284: GSM4407787: 10876; Peromyscus maniculatus; RNA-Seq
1 ILLUMINA (Illumina HiSeq 4000) run: 28.2M spots, 8.5G bases, 3.1Gb downloads

Submitted by: NCBI (GEO)
Study: Whole Transcriptome Sequencing of Peromyscus maniculatus in Response to High Fat Diet
show Abstracthide Abstract
Whole genome sequencing was generated to perform single nucleotide polymorphism (SNP) variant calling. Overall design: Analysis of RNA-seq gene expression between Peromyscus maniculatus that received a normal diet (n=6), P. maniculatus that received a high fat diet and developed steatosis (n=5), and P. maniculatus that received a high fat diet and did not develop steatosis (n=5). All RNA-seq samples are biological replicates.
Sample: 10876
SAMN14360981 • SRS6306804 • All experiments • All runs
Library:
Instrument: Illumina HiSeq 4000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Animals were sacrificed using isoflurane as an anesthetic followed by cervical dislocation, and the livers were collected. RNAs were extracted with a Qiagen RNeasy Plus Mini kit as per manufacturer's recommendations (Qiagen, Valencia, CA) RNA integrity was assessed using the Agilent Bioanalyzer and samples had a quality score ≥ 8.6. RNA libraries were prepared using established protocol with NEBNext Ultra II Directional RNA Library Prep Kit for Illumina (NEB, Lynn, MA). Each library was made with one of the TruSeq barcode index sequences and pooled together into one sample to be sequenced on the HiSeq 2x150bp pair-ended sequencing platform (Genewiz).
Experiment attributes:
GEO Accession: GSM4407787
Links:
Runs: 1 run, 28.2M spots, 8.5G bases, 3.1Gb
Run# of Spots# of BasesSizePublished
SRR1129272228,233,3788.5G3.1Gb2020-03-12

ID:
10332590

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...