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SRX8202098: Candida albicans infected Manduca sexta expression analysis
1 ILLUMINA (Illumina HiSeq 2500) run: 45.9M spots, 13.8G bases, 5.3Gb downloads

Design: Midgut mRNA was extracted using TRIzol reagent (Invitrogen, Inc.), quantified on the Agilent 2100 Bioanalyzer system. RNA-seq libraries (strand-specific, paired end) were generated with the TruSeq RNA sample prep kit (Illumina)
Submitted by: University of Bristol
Study: Candida albicans infected Manduca sexta expression analysis
show Abstracthide Abstract
Each year, fungi kill more patients than malaria or tuberculosis. It is thus imperative to have suitable host models for the study of fungal virulence and antifungal therapies. Here, we established M. sexta caterpillars as a novel host model for fungal disease. Fifth instar caterpillars are susceptible to the leading fungal pathogens of humans, can be rescued by antifungal drug treatment and facilitate tracking of fungal burden throughout the course of infection. This study also aimed to quantify expression differences in M. sexta caterpillars infected with the Candida albicans wild type and hog1 mutant strains, which is attenuated in virulence. To this end, three caterpillars were infected with either strain and mRNA extracted from the midgut 24 hours post infection. Both strains elicit different expression response profiles. Comparing the wild type response to mouse expression data, revealed a shared response to fungal pathogens.
Sample: Manduca sexta 5th instar larva from the University of Bath lab colony sampled at 37 degrees 24 hours post-infection.
SAMN14770380 • SRS6560173 • All experiments • All runs
Organism: Manduca sexta
Library:
Name: A5
Instrument: Illumina HiSeq 2500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: Oligo-dT
Layout: PAIRED
Runs: 1 run, 45.9M spots, 13.8G bases, 5.3Gb
Run# of Spots# of BasesSizePublished
SRR1163825745,854,49813.8G5.3Gb2020-08-05

ID:
10688654

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