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SRX8290832: GSM4523264: SI16_27G; Notolabrus celidotus; RNA-Seq
1 ILLUMINA (Illumina HiSeq 2500) run: 11M spots, 2.6G bases, 842.5Mb downloads

Submitted by: NCBI (GEO)
Study: Genomic basis of socially-cued sex change in the New Zealand spotty
show Abstracthide Abstract
Spotty wrasses (Notolabrus celidotus) undergo socially cued female-to-male sex change as adults. We combine captive social manipulations and time-series sampling with transcriptomic and methylome approaches to describe the molecular cascade that orchestrates gonadal metamorphosis. Our findings reveal at a molecular level how a normally committed developmental process remains plastic and is reversed to completely alter organ structures. Overall design: Captive social groups of wild-caught spotty wrasses from the Tauranga region in New Zealand were established and females induced to change sex using chemical (aromatase inhibitor fadrozole) or social (removal of dominant male) manipulations in 2014-2018. Time-series sampling was used to obtain biological replicates of transitional animals at early, mid and late stages of sex change. Females from unmanipulated tanks, plus the original males served as controls. Gonadal tissue was collected from each animal for genomic and histological analyses. RNA sequencing libraries were prepared for 95 total samples using Illumina's tru-seq stranded mRNA kit and sequenced using 2x125bp paired end Illumina HiSeq 2500. Cleaned reads were mapped to the N. celidotus genome using Rsubread and read counts were generated using FeatureCounts.
Sample: SI16_27G
SAMN14853747 • SRS6612430 • All experiments • All runs
Library:
Instrument: Illumina HiSeq 2500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Gonads were removed and immediately preserved in either RNAlater solution or flash frozen by submersion in isopentane on dry ice. RNA was extracted using Trizol reagent with column purification and DNase treatment. Illumina TruSeq Stranded mRNA libraries were prepared for sequencing using standard Illumina protocols
Experiment attributes:
GEO Accession: GSM4523264
Links:
Runs: 1 run, 11M spots, 2.6G bases, 842.5Mb
Run# of Spots# of BasesSizePublished
SRR1173169410,960,1052.6G842.5Mb2020-05-18

ID:
10793411

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