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SRX834455: Cross-section of small intestine from isolate Y23 at 96 hours post fed.: Sample Python bivittatus Y23_96h
1 ILLUMINA (Illumina Genome Analyzer IIx) run: 1.2M spots, 143.5M bases, 68.1Mb downloads

Design: "Shotgun RNAseq library with poly-A mRNA selection, Illumina TruSeq, and size selection to 250bp to 750bp."
Submitted by: University of Texas at Arlington
Study: Python bivittatus Transcriptome or Gene expression
show Abstracthide Abstract
Snakes provide a unique and valuable model system for studying the extremes of physiological remodeling, due to the ability of some species to rapidly up-regulate organ form and function upon feeding. The central model species for studying these responses has been the Burmese python (Python molurus bivittatus). In this study, we analyze the Burmese python intestine during such post-feeding remodeling along a series of time points to understand patterns of gene expression that underlie patterns in intestinal form and function during organ remodeling. Our results indicate a number of significant gene expression changes within the small intestine following feeding, including expression changes in candidate genes of known importance to intestinal function, such as those encoding for hydrolases, microvillus proteins, trafficking and transport proteins, and regulatory proteins. Much of this differential expression occurs early in the digestion process, with thousands of genes being up-regulated within the first six hours after feeding, and over 2,000 genes differentially expressed within 24 hours post-feeding. This study, including gene expression analysis coupled with physiological experiments on the Burmese python small intestine, indicate massive changes in gene expression that underlie this extreme phenotype that is so pronounced in snakes.
Sample: Cross-section of small intestine from isolate Y23 at 96 hours post fed.
SAMN03263941 • SRS812466 • All experiments • All runs
Library:
Name: Python bivittatus Y23_96h_2
Instrument: Illumina Genome Analyzer IIx
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: RANDOM
Layout: SINGLE
Spot descriptor:
forward

Experiment attributes:
alignment_software: BWA
Runs: 1 run, 1.2M spots, 143.5M bases, 68.1Mb
Run# of Spots# of BasesSizePublished
SRR17468281,236,788143.5M68.1Mb2015-01-21

ID:
1184230

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