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SRX9011874: GSM4748093: pooled whole embryos 100 ng/L EE2 rep5; Pimephales promelas; RNA-Seq
1 ILLUMINA (Illumina HiSeq 4000) run: 21.9M spots, 4.4G bases, 1.7Gb downloads

Submitted by: NCBI (GEO)
Study: Development of a comprehensive toxicity pathway model for 17a-ethinylestradiol (EE2) in early life stage fathead minnows (Pimephales promelas)
show Abstracthide Abstract
The goal of this study is to characterize molecular toxicity pathways associated with ethinylestradiol-induced toxicity and link these molecular perturbations to apical outcomes of regulatory relevance. Overall design: mRNA profiles of whole fathead minnows (Pimephales promelas) exposed to 0.01% DMSO, 20 ng/L EE2, and 100 ng/L EE2 (nominal concentrations) from < 6 hours post-fertilization to 4 days post-hatch
Sample: pooled whole embryos 100 ng/L EE2 rep5
SAMN15912961 • SRS7262982 • All experiments • All runs
Library:
Instrument: Illumina HiSeq 4000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Total RNA was extracted using QIAGEN RNEasy plus universal mini kit following the manufacturer's protocol Libraries were generated from 250 ng of total RNA. mRNA enrichment was performed using the NEBNext Poly(A) Magnetic Isolation Module (New England BioLabs). cDNA synthesis was achieved with the NEBNext RNA First Strand Synthesis and NEBNext Ultra Directional RNA Second Strand Synthesis Modules (New England BioLabs). The remaining steps were done using NEBNext Ultra II DNA Library Prep Kit for Illumina (New England BioLabs). Adapters and PCR primers were purchased from New England BioLabs. Libraries were quantified using the Kapa Illumina GA with Revised Primers-SYBR Fast Universal kit (Kapa Biosystems). Average size fragment was determined using a LabChip GX (PerkinElmer) instrument.
Experiment attributes:
GEO Accession: GSM4748093
Links:
Runs: 1 run, 21.9M spots, 4.4G bases, 1.7Gb
Run# of Spots# of BasesSizePublished
SRR1252162121,882,9674.4G1.7Gb2020-11-01

ID:
11715665

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