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SRX9096352: RNA-seq of felis catus: prepubertal ovarian tissue, vitrified
1 ILLUMINA (Illumina NovaSeq 6000) run: 23.2M spots, 7G bases, 2Gb downloads

Design: Total RNA was isolated from up to 10 mg of tissue using PureLinkTM RNA Mini Kit with on-column DNase Set. Only samples with RIN 7 were used for library preparation. Sequencing libraries were generated using TruSeq Stranded mRNA LT Sample Prep Kit from Illumina. Fragments were selected with insert sizes between 200-400 bp. The libraries were sequenced 150 bp paired-end with 30 million reads depth per sample.
Submitted by: Smithsonian Conservation Biology Institute
Study: Effect of vitrification and dehydration on ovarian tissue transcriptome in domestic cat
show Abstracthide Abstract
Long term preservation of living ovarian tissues is a critical approach in human reproductive medicine as well as in the conservation of rare animal genotypes. Understanding the impact of different preservation techniques on ovarian tissue and cells is essential in order to optimize and adapt the preservation protocols. Using the prepubertal domestic cat as a model, the objective was to study immediate effects of vitrification or microwave-assisted dehydration on the global transcriptome dynamics in the ovarian cortex. We performed RNA sequencing on ovarian tissue from six cats each divided into four groups: fresh tissue after dissection (F), vitrified/warmed tissue (V), tissue dehydrated for 5 min (D5) and 10 min (D10) with consequent rehydration.
Sample: V_5
SAMN16083707 • SRS7341540 • All experiments • All runs
Organism: Felis catus
Library:
Name: repOA-Seq12
Instrument: Illumina NovaSeq 6000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: size fractionation
Layout: PAIRED
Runs: 1 run, 23.2M spots, 7G bases, 2Gb
Run# of Spots# of BasesSizePublished
SRR1261303323,193,1057G2Gb2021-06-23

ID:
11818750

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