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SRX9470532: GSM4891814: MesAur_Sm_int_day14_CoV2_100pfu_3; Mesocricetus auratus; RNA-Seq
4 ILLUMINA (NextSeq 500) runs: 3.6M spots, 463.6M bases, 173.8Mb downloads

Submitted by: NCBI (GEO)
Study: Temporal and dosage-dependent transcriptional response to SARS-CoV-2 in lung, trachea, brain, olfactory bulb and small intestine of Syrian golden hamsters
show Abstracthide Abstract
Here we report the transcriptional response to SARS-CoV-2 in Syrian golden hamsters and compare it to the host response against Influenza A virus. The virus replicates fast to high titers in the respiratory tract followed by a local and systemic inflammatory response. A roust IFN-I reponse is mounted and lasts at leaset fourteen days in distal tissues together with other lasting transcriptional changes. Overall design: Syrian golden hamsters were infected with a low or a high dose of SARS-CoV-2 for either 1, 2, 4, 6, 8, or 14 days and five tissues were collected and examined by mRNA-sequencing.
Sample: MesAur_Sm_int_day14_CoV2_100pfu_3
SAMN16727639 • SRS7680885 • All experiments • All runs
Library:
Instrument: NextSeq 500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Construction protocol: Tissues were homogenized in 1ml TRIzol reagent (invitrogen) and RNA total RNA was extracted my phenol/chloroform extraction following manufacturer's protocol. All libraries were constructed using the TruSeq Stranded mRNA Library Prep Kit (Illumina) according to the manufacturer's instructions. Starting material: 1µg total RNA
Experiment attributes:
GEO Accession: GSM4891814
Links:
Runs: 4 runs, 3.6M spots, 463.6M bases, 173.8Mb
Run# of Spots# of BasesSizePublished
SRR13020187898,394116.6M43.8Mb2020-11-11
SRR13020188878,885113.5M42.3Mb2020-11-11
SRR13020189915,580118.7M45Mb2020-11-11
SRR13020190887,299114.8M42.6Mb2020-11-11

ID:
12376868

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