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SRX9568800: RNA-Seq of macaca fascicularis spleen survivor of Ebola virus Kikwit infection
1 ILLUMINA (Illumina HiSeq 4000) run: 25.2M spots, 2.5G bases, 882.5Mb downloads

Design: RNA extracted from tissue
Submitted by: University of California, Irvine
Study: Transcriptional analysis of lymphoid tissues from infected nonhuman primates reveals the basis for attenuation and immunogenicity of an Ebola virus encoding a mutant VP35 protein
show Abstracthide Abstract
This study investigated the transcriptional response to a low dose (20,000 PFU) of a mutant VP35 Zaire Ebola virus (VP35m) in cynomologus macaques. VP35 is a critical immune evasion factor for Zaire Ebola virus (EBOV). Our previous study using a high dose of VP35m (500,000 PFU) induced a robust transcriptional response in the whole blood of cynomolgus macques; these animals were protected from later backchallenge with a wild-type EBOV. Here, we conducted a transcriptional analysis of whole blood and lymphoid tissues (axillary lymph node, inguinal lymph node, spleen) in cynomolgus macaques following challenge with VP35m. We show robust induction of innate and adaptive processes. Additionally, transcriptional analysis of spleen tissues collected from one nonsurvivor and two survivors following backchallenge with wild type EBOV (Kikwit) demonstrate a distinct disease signature for survival.
Sample: VP35LD_backchallenge_spleen_141389_d28.fastq
SAMN16883259 • SRS7762097 • All experiments • All runs
Library:
Name: spleen_141389_survivor
Instrument: Illumina HiSeq 4000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: RANDOM PCR
Layout: SINGLE
Runs: 1 run, 25.2M spots, 2.5G bases, 882.5Mb
Run# of Spots# of BasesSizePublished
SRR1312683725,179,9362.5G882.5Mb2020-12-01

ID:
12500215

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