U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SRX968638: rnaseq of CB1
1 ILLUMINA (Illumina HiSeq 2500) run: 1.4M spots, 52.8M bases, 33.5Mb downloads

Design: tag-based rna-seq (Meyer et al. 2011)
Submitted by: University of Texas Austin
Study: Genomic determinants of coral heat tolerance across latitudes--gene_expression
show Abstracthide Abstract
As global warming progresses, reef-building corals could avoid local population declines through “genetic rescue” involving exchange of heat-tolerant genotypes across latitudes, but only if latitudinal variation in thermal tolerance is heritable. Here we show up to ten-fold increase in survival of the coral larvae under heat stress when their parents come from a lower latitude warmer location. Larval heat tolerance was associated with heritable differences in expression of oxidative, extracellular, transport and mitochondrial functions that signified the lack of baseline stress. Finally, several genomic regions strongly responded to selection for heat tolerance in inter-latitudinal reciprocal crosses. Taken together, our results demonstrate that variation in coral heat tolerance across latitudes has a strong genetic basis and could serve as raw material for natural selection.
Sample: CB1
SAMN03437938 • SRS883852 • All experiments • All runs
Library:
Name: CB1
Instrument: Illumina HiSeq 2500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Spot descriptor:
forward

Experiment attributes:
alignment_software: bowtie2
Runs: 1 run, 1.4M spots, 52.8M bases, 33.5Mb
Run# of Spots# of BasesSizePublished
SRR19296261,380,27152.8M33.5Mb2015-06-01

ID:
1410203

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...