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SRX971430: GSM1645501: CrxCr rep1; Capsella rubella; RNA-Seq
1 ILLUMINA (Illumina HiSeq 2000) run: 48.2M spots, 9.6G bases, 5.5Gb downloads

Submitted by: Gene Expression Omnibus (GEO)
Study: Non-reciprocal Interspecies Hybridization Barriers in the Capsella Genus are Established in the Endosperm
show Abstracthide Abstract
We described in this work the reproductive barrier between Capsella rubella and Capsella grandiflora leading to hybrid seed inviability. The transcriptome revealed a similar response to the one observed in interploidy hybrid seeds. Overall design: Study of seed transcriptome in Capsella rubella, Capsella grandiflora and reciprocal hybrid seeds
Sample: CrxCr rep1
SAMN03450014 • SRS886515 • All experiments • All runs
Library:
Instrument: Illumina HiSeq 2000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Two biological replicates with 300-500 seeds per replicate were generated. Seeds were harvested at 6 DAP and stored at -20oC in RNAlater® (Sigma-Aldrich, St Louis, USA). RNA extraction was done using RNAqueous® Kit with Plant RNA Isolation Aid (Life Technologies, Carlsbad, USA). The RNA-sequencing libraries were prepared using TruSeq® RNA Sample Preparation Kit v2 (Illumina, San Diego, USA) according to the manufacturer's instructions.
Experiment attributes:
GEO Accession: GSM1645501
Links:
External link:
Runs: 1 run, 48.2M spots, 9.6G bases, 5.5Gb
Run# of Spots# of BasesSizePublished
SRR194443848,224,4389.6G5.5Gb2015-06-16

ID:
1413164

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