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ERX102308: Whole Genome Sequencing of Leishmania infantum JPCM5
1 ILLUMINA (Illumina HiSeq 1000) run: 16.9M spots, 3.4G bases, 2.4Gb downloads

Submitted by: ULAVAL
Study: We have generated Leishmania hybrids by whole genome transformation of Leishmania infantum with genomic DNAs extracted from Leishmania major donor strains. Whole genome sequencing of the hybrids revealed that large genomic fragments of up to 40 kb could be successfully transferred. This protocol will be very useful for studying the role of species-specific loci in particular phenotypic traits and for assessing the role of point mutations.
show Abstracthide Abstract
Genetic exchange is a powerful tool to study gene function in microorganisms. Here, we tested the feasibility of generating Leishmania hybrids by electroporating genomic DNA of donor cells into recipient Leishmania parasites. The donor DNA was marked with a drug resistance marker facilitating the selection of DNA transfer into the recipient cells. The transferred DNA was integrated exclusively at homologous locus and was as large as 45 kb. The independent generation of L. infantum hybrids with L. major sequences was possible for several chromosomal regions. Interfering with the mismatch repair machinery by inactivating the MSH2 gene enabled an increased efficiency of recombination between divergent sequences, hence favouring the selection of hybrids between species. Hybrids were shown to acquire the phenotype derived from the donor cells, as demonstrated for the transfer of drug resistance genes from L. major into L. infantum. The described method is a first step allowing the generation of in vitro hybrids for testing gene functions in a natural genomic context in the parasite Leishmania.
Sample: ldi 263 hybrid at its MT locus
SAMEA1325274 • ERS138995 • All experiments • All runs
Library:
Name: unspecified
Instrument: Illumina HiSeq 1000
Strategy: OTHER
Source: GENOMIC
Selection: unspecified
Layout: PAIRED
Spot descriptor:
  forward  reverse

Runs: 1 run, 16.9M spots, 3.4G bases, 2.4Gb
Run# of Spots# of BasesSizePublished
ERR12615916,885,4863.4G2.4Gb2012-06-06

ID:
192769

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