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ERX109954: Whole Genome Sequencing of Mycobacterium tuberculosis
1 ILLUMINA (Illumina HiSeq 2000) run: 4.5M spots, 907.5M bases, 539.2Mb downloads

Design: Illumina sequencing of library 4683944, constructed from sample accession ERS094225 for study accession ERP000192. This is part of an Illumina multiplexed sequencing run (7755_4). This submission includes reads tagged with the sequence TCATTGAG.
Submitted by: The Wellcome Trust Sanger Institute (SC)
Study: Discovery of sequence diversity in Mycobacterium tuberculosis (Russia collection)
show Abstracthide Abstract
“Evolution and transmission of drug-resistant tuberculosis in a Russian population.” Pubmed ID: 24464101. The molecular mechanisms determining the transmissibility and prevalence of drug-resistant tuberculosis in a population were investigated through whole-genome sequencing of 1,000 prospectively obtained patient isolates from Russia. Two-thirds belonged to the Beijing lineage, which was dominated by two homogeneous clades. Multidrug-resistant (MDR) genotypes were found in 48% of isolates overall and in 87% of the major clades. The most common rpoB mutation was associated with fitness-compensatory mutations in rpoA or rpoC, and a new intragenic compensatory substitution was identified. The proportion of MDR cases with extensively drug-resistant (XDR) tuberculosis was 16% overall, with 65% of MDR isolates harboring eis mutations, selected by kanamycin therapy, which may drive the expansion of strains with enhanced virulence. The combination of drug resistance and compensatory mutations displayed by the major clades confers clinical resistance without compromising fitness and transmissibility, showing that, in addition to weaknesses in the tuberculosis control program, biological factors drive the persistence and spread of MDR and XDR tuberculosis in Russia and beyond.
Sample: Mycobacterium tuberculosis; Mycobacterium tuberculosis
SAMEA1403751 • ERS094225 • All experiments • All runs
Library:
Name: 4683944
Instrument: Illumina HiSeq 2000
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Construction protocol: Standard
Runs: 1 run, 4.5M spots, 907.5M bases, 539.2Mb
Run# of Spots# of BasesSizePublished
ERR1339364,537,655907.5M539.2Mb2012-08-04

ID:
220124

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