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SRX5646031: GSM3712042: PA-12 Spleen; Pteropus alecto; RNA-Seq
1 ILLUMINA (Illumina HiSeq 3000) run: 34.5M spots, 10.4G bases, 3.9Gb downloads

Submitted by: NCBI (GEO)
Study: Transcriptomic profiling of bat immune responses (P. alecto)
show Abstracthide Abstract
To examine the fundamental immunity in bats, particularly the status of their innate immune system in the basal healthy state, we profile Pteropus alecto bat tissue with Deep NGS coverage. This is coupled to a paired experiment where bats were stimulated in vivo with various PRR ligands to activate immune pathways. Overall design: 5 bats as healthy control for lung, 4 bats x spleen/liver
Sample: PA-12 Spleen
SAMN11349728 • SRS4591658 • All experiments • All runs
Organism: Pteropus alecto
Library:
Instrument: Illumina HiSeq 3000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Tissue prepared fresh into RNA later - soaked overnight then replaced and snap frozen. Homogenized with ceramic beads in a homogenizer - extract with Qiagen micro plus kit. Total RNA was checked using the RNA 6000 LabChip Kit on the Agilent Bioanalyzer (Agilent Technologies, Palo Alto, CA). RNAseq libraries were prepared using Illumina Tru-Seq Stranded Total RNA with Ribo-Zero Gold kit following the manufacturer's instructions (Illumina, San Diego, California, USA). Libraries were validated with an Agilent Bioanalyzer (Agilent Technologies, Palo Alto, CA), diluted and applied to an Illumina flow cell using the Illumina cBOT system. Sequencing was performed on an Illumina HiSeq 3000 sequencer at the Duke-NUS Genome Biology Facility with the paired-end 150-bp read option.
Experiment attributes:
GEO Accession: GSM3712042
Links:
Runs: 1 run, 34.5M spots, 10.4G bases, 3.9Gb
Run# of Spots# of BasesSizePublished
SRR885851634,506,42210.4G3.9Gb2020-02-20

ID:
7607358

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