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SRX5864600: RNA-seq of Patagona gigas peruviana: liver/muscle
1 ILLUMINA (Illumina HiSeq 2000) run: 13.4M spots, 2.7G bases, 1.7Gb downloads

Design: Extracted total RNA from liver/muscle tissue and generated cDNA library with NEBNext Ultra RNA library prep kit. Sequenced as 1 of 12 samples on 1 lane with 100bp paired-end on Illumina HiSeq2000 at Vincent J Coates Genomics Sequencing Laboratory at UC Berkeley.
Submitted by: Stony Brook University
Study: High-altitude adaptation in Andean hummingbirds via comparative transcriptomics
show Abstracthide Abstract
Genetic adaptation is difficult to study in non-model organisms, especially as laboratory experiments are impractical for long-lived species. However, new genomic methods have revealed specific amino acid changes, genes, and biochemical pathways that are repeatedly involved in adaptation to survival in high altitude environments. This study addresses two questions: 1) What is the genetic basis for high-altitude adaptation in Andean hummingbirds? And 2) Are the mechanisms the same across divergent taxa and populations? Studying natural cases of parallel evolution is the key to discovering how predictable evolutionary processes are and the range of possible adaptive paths.
Sample: http://arctos.database.museum/guid/MSB:Bird:35025
SAMN11774672 • SRS4787974 • All experiments • All runs
Organism: Patagona gigas
Library:
Name: CGML001L
Instrument: Illumina HiSeq 2000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Runs: 1 run, 13.4M spots, 2.7G bases, 1.7Gb
Run# of Spots# of BasesSizePublished
SRR908943813,424,0422.7G1.7Gb2019-05-19

ID:
7875343

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