Illumina HiSeq 2500 sequencing; qiita_ptid_4582:10894.HR1328 - SRA

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ERX3957345: Illumina HiSeq 2500 sequencing; qiita_ptid_4582:10894.HR1328
1 ILLUMINA (Illumina HiSeq 2500) run: 87,268 spots, 10.9M bases, 3.9Mb downloads

Design: longitudinal series comparing CS and CS with seeding in moms and babies

Submitted by: University of California San Diego Microbiome Initiative (University of California San Diego Microbiome Init)

Study: MG_baby timeseries

PRJEB36857 • ERP120105 • All experiments • All runs

Sample: Development Ecology of the Human Microbiome-longitudinal study; 10894.HR1328

SAMEA6584949 • ERS4349251 • All experiments • All runs

Organism: human vaginal metagenome

Library:

Name: 10894.HR1328

Instrument: Illumina HiSeq 2500

Strategy: OTHER

Source: METAGENOMIC

Selection: PCR

Layout: SINGLE

Construction protocol: Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4

Experiment attributes: (show all 30 attributes...) (hide...)

barcode: TACTAGATATTA

center_name: NYU Langone

center_project_name: MG - longitudinal babies

extraction_robot: N/A

extractionkit_lot: N/A

linker: GT

mastermix_lot: 443912

orig_name: HR1328

pcr_primers: FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT

plating: N/A

primer: GTGTGYCAGCMGCCGCGGTAA

primer_date: 11917

primer_plate: 8

processing_robot: RIKE

project_name: Hudson_River

run_center: UCSDMI

run_date: 2/16/17

run_prefix: MG_Baby2_Lane6_S6_L006

runid: 170216_D00611_0439_BCAJ1MANXX_Knight_2

sample_plate: Hudson_River_Plate_5

sequencing_id: lane 6_170216_D00611_0439_BCAJ1MANXX_Knight_512

sequencing_meth: Sequencing by synthesis

target_gene: 16S rRNA

target_subfragment: V4

tm1000_8_tool: N/A

tm300_8_tool: 311318B

tm50_8_tool: 311426B

water_lot: 1798402

well_description: Hudson_River_Plate_5_HR1328_C10

well_id: C10

Runs: 1 run, 87,268 spots, 10.9M bases, 3.9Mb

Run	# of Spots	# of Bases	Size	Published
ERR3949545	87,268	10.9M	3.9Mb	2020-02-25

ID:: 10200648

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