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ERX3966079: Illumina MiSeq sequencing; qiita_ptid_6210:11943.6b0zm
1 ILLUMINA (Illumina MiSeq) run: 153,480 spots, 42M bases, 19.6Mb downloads

Design: oral swab of patient parent trios with CNO
Submitted by: University of California San Diego Microbiome Initiative (University of California San Diego Microbiome Init)
Study: Role of the oral microbiome in chronic non-bacterial osteomyelitis in children and adolescents
show Abstracthide Abstract
bjectives: To identify the role and interplay of the oral microbiome in children and adolescents with chronic non-bacterial osteomyelitis (CNO) in respect of age distribution, gender differences, change upon medication, disease activity and the influence of body site. Results: The administration of immunomodulatory medication led to a shift of the microbiome (p < 0.02). Furthermore, there was a significant difference in bacterial communities between age group 3-8 years and age group 9-14 years. Significant differences were seen in bacterial colonization on different sites in the oral cavity showing a predominance of Streptococcus salivarius in the center and Hämophilus influenza on the left side of the tongue. No significant change of the microbiome could be noted in respect of gender and disease activity. Conclusions: We present first results of a pilot study in children and adolescents with a rare autoinflammatory bone disease. Differences in age, body site and the administration of medication reveal significant modifications of the microbiome underscoring the relevance of this environmental factor in the etiopathogenesis of CNO.
Sample: 11943.6b0zm; CNO_microbiome
SAMEA6592543 • ERS4356836 • All experiments • All runs
Library:
Name: 11943.6b0zm
Instrument: Illumina MiSeq
Strategy: OTHER
Source: METAGENOMIC
Selection: PCR
Layout: SINGLE
Construction protocol: Earth Microbiome Project
Experiment attributes: (show all 21 attributes...) (hide...)
barcode: ACTGCATA
center_name: BMFZ
center_project_name: CNO and microbiome
description: Human, oral microbiome
flowcell: 180913_M04304_0134_000000000-C45VP
i5_index: ACTGCATA
i5_index_id: S506
i7_index: AGGCAGAA
i7_index_id: N703
investigator_name: Mona Zeus
lane: 1
linker: GT
pcr_primers: FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT
primer: GTGTGYCAGCMGCCGCGGTAA
run_center: University Hospital of Duesseldorf
run_date: 2018-09-13
run_prefix: 940
sample_project: microbiome_prassad
sequencing_meth: Sequencing by synthesis
target_gene: 16S rRNA
target_subfragment: V4
Runs: 1 run, 153,480 spots, 42M bases, 19.6Mb
Run# of Spots# of BasesSizePublished
ERR3958275153,48042M19.6Mb2020-03-03

ID:
10247941

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