U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from BioSample

SRX8883008: UCE sequences of Leptolamina_ponapenis_1339637
1 ILLUMINA (Illumina HiSeq 2500) run: 2.8M spots, 702.9M bases, 355.7Mb downloads

Design: Samples were extracted using Qiagen DNeasy extraction kits. DNA was sheared to 400-600 bp using a QSonica Q800R sonicator. Genomic libraries were prepared using Kapa Hyper Prep Kits (1/4 volume reactions) and iTru, 8bp dual-indexing adapters (Glenn et al. 2019). Samples were pooled into pools of 8-10 samples and enriched for ultraconserved elements (UCEs) using custom-designed probes (MYcroarray, Inc., now ArborBiosciences, Ann Arbor, MI) targeting 2590 UCE loci in Hymenoptera (myBaits UCE Hymenoptera 2.5Kv2P, Branstetter et al. (2017)). Enriched pools were pooled together (up to 100 individual samples) and shipped to the University of Utah genomics core facility for sequencing on an Illumina HiSeq 2500 instrument (2x125 bp v4 chemistry). Submitted here are raw, untrimmed sequencing reads. For trimming raw reads, use i7:GATCGGAAGAGCACACGTCTGAACTCCAGTCAC*ATCTCGTATGCCGTCTTCTGCTTG and i5:AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGT*GTGTAGATCTCGGTGGTCGCCGTATCATT, where * indicates the index sequence. Adapter sequences are specified as i5-iTru5+i7-iTru7 in the sequence file names.
Submitted by: Museum fuer Naturkunde
Study: Phylogenomics and evolution of cynipoid wasps
show Abstracthide Abstract
Parasitoidism, a specialized life strategy in which a parasite eventually kills its host, is frequently found within the insect order Hymenoptera (wasps, ants and bees). Within the Cynipoidea, a species-rich group of small to minute wasps, a parasitoid lifestyle is one of two dominant life strategies, with the other being phytophagy in the form of gall-making. Less commonly cynipoid wasps exhibit inquilinism, a strategy where some species have adapted to usurp other species galls instead of inducing their own. Using a phylogenomic data set of ultraconserved elements and extensive taxon sampling, we generated a solid phylogenetic framework and timescale for cynipoid systematics and the evolution of cynipoid life histories. Rooting our analyses with non-cynipoid outgroups, the Paralaucini, a group of lethal inquilines (which usurp a gall and kill its inducer), emerged as sister-group to the rest of Cynipoidea, rendering the gall wasp family Cynipidae paraphyletic. The families Ibaliidae and Liopteridae, wood-boring insect parasitoids previously thought to be the most ancestral cynipoids, were found nested as sister-group to the family Figitidae. Cynipoidea originated in the early Jurassic around 190 Ma. Inquilinism or parasitoidism are suggested as ancestral and dominant strategy throughout the early evolution of cynipoids, depending on whether a simple (three states: parasitoidism, inquilinism and galling) or more complex (seven states: parasitoidism, inquilinism and galling split by host use) model is employed.Conclusions: Our study has significant impact not only on understanding cynipoid evolution, but highlights also the crucial importance of adequate outgroup sampling. Previous analyses on cynipoids have favored a parasitoid-first scenario, yet an inquiline-first scenario for Cynipoidea, as our simpler model suggests, is also appealing given that the earliest branching lineage Paralaucini exhibits lethal inquilinism, a strategy which could be regarded as intermediate stage on the transition between parasitoidism and gall-making.
Sample:
SAMN15608918 • SRS7188413 • All experiments • All runs
Library:
Name: Leptolamina_ponapenis_1339637
Instrument: Illumina HiSeq 2500
Strategy: WGS
Source: GENOMIC
Selection: Hybrid Selection
Layout: PAIRED
Runs: 1 run, 2.8M spots, 702.9M bases, 355.7Mb
Run# of Spots# of BasesSizePublished
SRR123843842,811,471702.9M355.7Mb2020-11-24

ID:
11547714

Supplemental Content