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SRX11485825: RNAseq of Atta cephalotes: adult worker brains
1 ILLUMINA (NextSeq 500) run: 23.8M spots, 1.8G bases, 668.2Mb downloads

Design: Individual brains were dissected from workers that were snap-frozen only during 1100-1300 hr to minimize potential influences of circadian rhythms on gene expression. Individual samples belonging to different worker size groups and colonies were distributed across extraction batches, library batches, and sequence lanes to mitigate confounding batch effects. Total RNA was extracted from worker brains using a ThermoFisher PicoPure kit and a modified protocol for homogenization; three to 10 brains were pooled into a single microcentrifuge tube for each sample during the dissection process. Libraries were sequenced by Harvard BioPolymers using a combination of Illumina NextSeq and MiSeq with SE 75 reads. RNAseq unstranded libraries with mRNA poly-A selection were prepared by Harvard BioPolymers using a KAPA mRNA HyperPrep kit. mRNA sequence libraries were individually barcoded and multiplexed in equal proportions and all libraries were sequenced across four lanes.
Submitted by: Boston University
Study: Transcriptomic evidence of mosaic brain evolution underlying complex division of labor in a social insect
show Abstracthide Abstract
Concerted developmental programming may constrain changes in component structures of the brain, thus limiting the ability of selection on individual brain compartments to form an adaptive mosaic independent of total brain size or body size. Measuring patterns of gene expression underpinning brain scaling can distinguish between concerted and mosaic evolution. Species exhibiting exceptional size and behavioral polyphenisms provide excellent systems to test predictions of brain evolution models by quantifying brain gene expression. We examined patterns of brain gene expression in a highly polymorphic and behaviorally complex social insect, the leafcutter ant Atta cephalotes. Consistent with expectations of concerted evolution, approximately ~50% of differential gene expression observed among three morphologically, behaviorally, and neuroanatomically differentiated worker size groups was attributable to body size. Additionally, we found strong evidence of differential brain gene expression that could not be explained by body size variation. Transcriptomic results coupled patterns of worker size and allometric brain compartment scaling with task performance to identify patterns of gene expression not explained by worker size, instead supporting mosaicism. Additionally, we observed enriched gene ontology terms associated with nucleic acid regulation, metabolism, neurotransmission, and sensory perception, further supporting a role for brain gene expression with worker social role. Our findings demonstrate that differential brain gene expression among polymorphic workers is linked to behavioral and neuroanatomical differentiation underpinning complex agrarian division of labor in A. cephalotes.
Sample:
SAMN20286389 • SRS9525742 • All experiments • All runs
Organism: Atta cephalotes
Library:
Name: LIB042574_TRA00159660
Instrument: NextSeq 500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: DNase
Layout: SINGLE
Runs: 1 run, 23.8M spots, 1.8G bases, 668.2Mb
Run# of Spots# of BasesSizePublished
SRR1517872223,846,9731.8G668.2Mb2024-01-01

ID:
15377081

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