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SRX287490: GSM1150926: Condylura_TG2; Condylura cristata; RNA-Seq
1 ILLUMINA (Illumina Genome Analyzer II) run: 22.1M spots, 797M bases, 380.4Mb downloads

Submitted by: Gene Expression Omnibus (GEO)
Study: The star-nosed mole reveals clues to the molecular basis of mammalian touch.
show Abstracthide Abstract
Little is known about the molecular mechanisms underlying mammalian touch transduction. To identify novel candidate transducers, we examined the molecular and cellular basis of touch in one of the most sensitive tactile organs in the animal kingdom, the star of the star-nosed mole. Our findings demonstrate that the trigeminal ganglia innervating the star are enriched in tactile-sensitive neurons, resulting in a higher proportion of light touch fibers and lower proportion of nociceptors compared to the dorsal root ganglia innervating the rest of the body. We exploit this difference using transcriptome analysis of the star-nosed mole sensory ganglia to identify novel candidate mammalian touch and pain transducers. The most enriched candidates are also expressed in mouse somatosesensory ganglia, suggesting they may mediate transduction in diverse species and are not unique to moles. These findings highlight the utility of examining diverse and specialized species to address fundamental questions in mammalian biology. Overall design: Examination of the transcriptome of 3 trigeminal and 3 dorsal root ganglia
Sample: Condylura_TG2
SAMN02183194 • SRS430177 • All experiments • All runs
Library:
Instrument: Illumina Genome Analyzer II
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Construction protocol: Tissues were removed and homogenized in Trizol (Invitrogen) as per the manufacturer’s instructions. Illumina TruSeq RNA Sample Prep Kit was used with about 1 ug of total RNA for the construction of sequencing libraries. After poly-A mRNA selection, the first Condylura trigeminal and dorsal root ganglia samples (Condylura_TG1 and Condylura_DRG1) were retrotranscribed and the Illumina Genomic Sample Prep Kit was used to generate libraries. These were sequenced on a Genome Analyzer II (76 bp). The remaining Condylura and Mus samples were processed using the Illumina TruSeq kit, and libraries were sequenced on a HighSeq 2000 (36 bp or 50bp). WHICH ONES ON WHICH The Condylura samples are single reads, the Mus samples are paired-end.
Experiment attributes:
GEO Accession: GSM1150926
Links:
External link:
Runs: 1 run, 22.1M spots, 797M bases, 380.4Mb
Run# of Spots# of BasesSizePublished
SRR86961122,140,068797M380.4Mb2015-07-22

ID:
407325

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