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ERX6682683: Illumina MiSeq paired end sequencing; Rhodococcus fascians Genomic Sequencing
1 ILLUMINA (Illumina MiSeq) run: 2.2M spots, 1G bases, 597Mb downloads

Submitted by: University of Dundee
Study: Barley Rhizosphere SynCom
show Abstracthide Abstract
The rhizosphere, the area of soil directly adhered to plant roots, is a hot spot for microbial colonisation. It has been shown that there is a direct correlation between root hair development, rhizosphere structure and enrichment , and plant fitness. Previous work by Robertson-Albertyn et al (Frontiers, 2017) investigated the impact root hair mutations had on the Barley rhizosphere microbiota; it was shown that not only do root hair mutations cause lower plant biomass, they also displace the microbiota with a number of OTUs significantly enriched in the rhizosphere of mutant plants versus their wild type homologues. The next step of this study was to investigate what proportion of the Barley rhizosphere can be cultured using traditional microbiology techniques then to isolate, identify and categorise these microorganisms. Once this is achieved isolates carrying genes with known plant growth promoting properties will be used to inoculate both wild type and mutant barley seedlings in order to investigate the impact these organisms may have on plant fitness.
Sample: barley SynCom isolate Bi91
SAMEA7892365 • ERS5639601 • All experiments • All runs
Library:
Name: Rhodococcus fascians Bi91
Instrument: Illumina MiSeq
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Construction protocol: Library construction was carried out by MicrobesNG (Birmingham, UK) using the Nextera XT LIbrary Prep Kit(Illumina, San Dieago, USA) following the manufacturer’s protocol with the following modifications: 2 ng of DNA instead of 1 ng were used as input, and PCR elongation time was increased to 1 min from 30 seconds.
Runs: 1 run, 2.2M spots, 1G bases, 597Mb
Run# of Spots# of BasesSizePublished
ERR71137882,236,7591G597Mb2021-10-30

ID:
17247584

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