GSM5660159: Fin-uninjured-control-1; Danio rerio; RNA-Seq - SRA

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SRX12805807: GSM5660159: Fin-uninjured-control-1; Danio rerio; RNA-Seq
1 ILLUMINA (Illumina NovaSeq 6000) run: 91M spots, 27.5G bases, 7.6Gb downloads

Submitted by: NCBI (GEO)

Study: Regulation of fin regeneration by a voltage-gated sodium channel

PRJNA775662 • SRP343527 • All experiments • All runs

show Abstracthide Abstract

We compare the brain and fin RNA-seq profiles of wild-type and scn8ab mutant zebrafish, which exhibit locomotion and fin regeneration defects. Overall design: Biological duplicate brain and fin profiles of adult wild-type sibling and scn8ab(temca) mutant zebrafish. Corresponding sample pools include: whole brain of wild-type siblings and temca mutants and uninjured and 36 hpa fins of wild-type siblings and temca mutants at the restrictive temperature (33 degrees)

Sample: Fin-uninjured-control-1

SAMN22612526 • SRS10751268 • All experiments • All runs

Organism: Danio rerio

Library:

Instrument: Illumina NovaSeq 6000

Strategy: RNA-Seq

Source: TRANSCRIPTOMIC

Selection: cDNA

Layout: PAIRED

Construction protocol: Tissues were homogenized in immediately after dissection and RNA was extracted using Trizol reagent. RNA libraries were prepared for sequencing using standard Illumina protocols

Experiment attributes:

GEO Accession: GSM5660159

Links:

NCBI link: NCBI Entrez (gds)

Runs: 1 run, 91M spots, 27.5G bases, 7.6Gb

Run	# of Spots	# of Bases	Size	Published
SRR16604669	90,991,642	27.5G	7.6Gb	2022-06-10

ID:: 17406861

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