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SRX13171790: GSM5695705: NB69 H3K4me3; Homo sapiens; ChIP-Seq
1 ILLUMINA (Illumina HiSeq 2000) run: 11.5M spots, 585.7M bases, 373.6Mb downloads

External Id: GSM5695705_r1
Submitted by: Health Data Science Unit, Medical Faculty, University Heidelberg
Study: MYCN mediates cysteine addiction and sensitizes to ferroptosis
show Abstracthide Abstract
Overexpression of MYC family members is linked to poor clinical outcome in many human cancers. These oncoproteins drive proliferation, alter metabolism, and mediate an antioxidant response to maintain tumor cell redox balance. However, to date, there are no effective inhibitors that specifically target MYC-amplified tumors. We demonstrate that MYCN-amplified, aggressive childhood neuroblastoma cells undergo ferroptotic cell death in vivo in the absence of intracellular cysteine, thus implicating MYCN as a predictive biomarker for ferroptosis sensitivity in neuroblastoma. Although cysteine is provided by both uptake from the microenvironment and MYCN-induced transsulfuration of methionine, glutathione levels remain low in these highly proliferative cancer cells due to concomitant cysteine utilization for protein and nucleotide synthesis. Consequently, MYCN-amplified neuroblastoma cells are highly susceptible to lipid peroxidation and ferroptosis, which must be counteracted by GPX4 activity. Pharmacological inhibition of both cystine uptake and transsulfuration combined with GPX4 inactivation resulted in tumor remission in an orthotopic MYCN-amplified neuroblastoma model. Our data show that MYCN-amplified neuroblastoma is sensitized to ferroptosis, which can be exploited therapeutically, by depleting the intracellular cysteine pool with concomitant GPX4 inactivation. These findings may help to develop novel clinical strategies to target MYCN-amplified tumors by inducing ferroptotic cell death. Overall design: H3K4me1, H3K4me3, H3K27ac, H3K27me3, H3K36me3, and H3K9me3 histone modifications in 8 neuroblastoma cell-lines
Sample: NB69 H3K4me3
SAMN23297514 • SRS11101720 • All experiments • All runs
Organism: Homo sapiens
Library:
Name: GSM5695705
Instrument: Illumina HiSeq 2000
Strategy: ChIP-Seq
Source: GENOMIC
Selection: ChIP
Layout: SINGLE
Construction protocol: Chromatin immunoprecipitation, formaldehyde cross-linking of cells, cell lysis, sonication and library preparation were performed as described previously (Blecher-Gonen, R. et al. High-throughput chromatin immunoprecipitation for genome-wide mapping of in vivo protein-DNA interactions and epigenomic states. Nature protocols 8, 539-554, doi:10.1038/nprot.2013.023 (2013)). Approximately 4 × 106 cells (1 × 106 cells per individual immunoprecipitation) were used and cell lysis for each sample was achieved by 30 min incubation on ice in 950 µl RIPA I (10 mM Tris-HCl (pH 8.0), 1 mM ethylenediaminetetraacetic acid (pH 8.0), 140 mM NaCl, 0.2% sodium dodecyl sulfate and 0.1% sodium deoxycholate (DOC)). Library preparation was performed using the NEBNext Ultra DNA Library Prep Kit (New England Biolabs) according to the manufacturer's protocol. Samples were mixed in equal molar ratios and sequenced on an Illumina sequencing platform.
Runs: 1 run, 11.5M spots, 585.7M bases, 373.6Mb
Run# of Spots# of BasesSizePublished
SRR1698103411,484,245585.7M373.6Mb2022-01-18

ID:
17984511

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