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SRX554360: Whole genome shotgun sequencing of Salmonella enterica subsp. enterica serovar Heidelberg str. WAPHL-SAL-A00393 by Illumina MiSeq
1 ILLUMINA (Illumina MiSeq) run: 1.1M spots, 508.4M bases, 341.3Mb downloads

Design: MiSeq deep shotgun sequencing of cultured isolate.
Submitted by: FOOD AND DRUG ADMINISTRATION, CENTER FOR FOOD SAFETY AND APPLIED NUTRITION (CFSAN)
Study: GenomeTrakr Project: Washington State Department of Health Public Health Laboratory
PRJNA183851 • SRP028334 • All experiments • All runs
show Abstracthide Abstract
Currently encompasses whole genome sequencing of cultured pathogens as part of a surveillance project for the rapid detection of outbreaks of foodborne illnesses
Sample:
SAMN02640956 • SRS621638 • All experiments • All runs
Organism: Salmonella enterica subsp. enterica serovar Heidelberg
Library:
Name: Salmonella enterica str. WAPHL-SAL-A00393 shotgun
Instrument: Illumina MiSeq
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Construction protocol: Illumina Nextera XT library created for Salmonella enterica subsp. enterica serovar Heidelberg str. WAPHL-SAL-A00393.
Spot descriptor:
1  forward251  reverse

Pipeline: show...hide...
NameStepPrev StepProgramVersion
base caller0NULLRTA1.18.42
Runs: 1 run, 1.1M spots, 508.4M bases, 341.3Mb
Run# of Spots# of BasesSizePublished
SRR13005551,076,455508.4M341.3Mb2014-06-01

ID:
791704

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