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SRX14364490: RNA-seq of Danio rerio whole kidney marrow (CG1)
1 ILLUMINA (Illumina NovaSeq 6000) run: 60.6M spots, 18.2G bases, 5.3Gb downloads

Design: CG1 WT zebrafish were sacrificed to harvest the whole kidney marrow (WKM) for further analysis. The RNA was extracted from WKM cells using the RNeasy Mini Kit according to the manufacturers instructions (Qiagen). mRNA was enriched using magnetic beads with Oligo (dT), fragmented and converted to cDNA, size selected and PCR amplified generating paired-end 100-bp sequences using a Illumina NovaSeq 6000.
Submitted by: Instituto de Medicina Molecular Joao Lobo Antunes
Study: Mutant IL7R collaborates with MYC to induce T-cell Acute Lymphoblastic Leukemia
show Abstracthide Abstract
T-cell acute lymphoblastic leukemia (T-ALL) is an aggressive pediatric cancer. Amongst the wide array of driver mutations, 10% of T-ALL patients display gain-of-function mutations in the IL-7 receptor alpha chain (IL-7Ralpha, encoded by IL7R), which occur in different molecular subtypes of this disease. However, it is still unclear whether IL-7R mutational activation is sufficient to transform T-cell precursors. Also, which genes cooperate with IL7R to drive leukemogenesis remain poorly defined. Here, we demonstrate that mutant IL7R alone is capable of inducing T-ALL with long-latency in stable transgenic zebrafish and transformation is associated with MYC transcriptional activation. Additionally, we find that mutant IL7R collaborates with Myc to induce early onset T-ALL in transgenic zebrafish. T-ALLs co-expressing mutant IL7R and Myc show activation of STAT5 and AKT pathways, harbor reduced numbers of apoptotic cells and remake tumors in transplanted zebrafish faster than T-ALLs expressing Myc alone. Moreover, limiting-dilution cell transplantation experiments reveal that activated IL-7R signaling increases the overall frequency of leukemia propagating cells. Our work highlights a synergy between mutant IL7R and Myc in inducing T-ALL and demonstrates that mutant IL7R enriches for leukemia propagating potential.
Sample:
SAMN26424666 • SRS12177785 • All experiments • All runs
Organism: Danio rerio
Library:
Name: WKM-CG1-5
Instrument: Illumina NovaSeq 6000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: PolyA
Layout: PAIRED
Runs: 1 run, 60.6M spots, 18.2G bases, 5.3Gb
Run# of Spots# of BasesSizePublished
SRR1821808560,614,11518.2G5.3Gb2023-03-01

ID:
20405300

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