U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from BioSample

SRX14759775: RNA-Seq of Aspergillus sydowii
1 ILLUMINA (Illumina HiSeq 2500) run: 475.8M spots, 120.4G bases, 33.7Gb downloads

Design: Quality check for the sampleswere assessed by Qubit RNA Assay Kit and Agilent bioanalyzer. The profileswere communicated and considered pass for all samples. Library constructionwas carried out using Illumina TruSeq mRNA library prep kit. Quality check ofthe libraries was performed using Qubit DNA assay and Agilent bioanalyzer. The libraries were pooled and quantified by qPCR. Sequencing was performedon the HiSeq platform.
Submitted by: UAEM
Study: The kosmotropy limits in fungi: Aspergillus sydowii as a model of kosmotolerant
show Abstracthide Abstract
Environments with extremely water depravation are critical for microbial growth. The thermodynamic parameter that defines the amount of free water in an aqueous solution is called water activity (aw), and it is severely restricted at aw < 0.90.Solutes like NaCl, KCl and sorbitol classified as kosmotropes (water-structure makers), can reduce aw causing effects on the growth of microorganisms, osmotic stress, and cytotoxicity. This condition leads to metabolic and phenotypical changes in order to restore the osmotic balance of the cell.For those reasons, the aim of this study was to determine potential differences in the molecular, metabolic and phenotypical responses of A. sydowii (a well-adapted pathogen), at low aw imposed by kosmotropes compounds. Transcriptomics allowed us to identify the genes involved in the cellular response of this fungi to extreme water deprivation imposed by 3 kosmotropes (NaCl, KCl and sorbitol). Differences in the utilization of different substrates were determined using the modern Biolog FF Microplate system. We also analyze the micro- and macro-morphological characters of A. sydowii in these conditions.To the best of our knowledge, this is the first comparative study of a halophilic fungus in the presence of saturated amounts of NaCl, KCl and sorbitol.
Sample:
SAMN27381287 • SRS12520067 • All experiments • All runs
Library:
Name: 15031047
Instrument: Illumina HiSeq 2500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: RT-PCR
Layout: PAIRED
Runs: 1 run, 475.8M spots, 120.4G bases, 33.7Gb
Run# of Spots# of BasesSizePublished
SRR18656777475,762,717120.4G33.7Gb2023-12-01

ID:
21134915

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...