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DRX338188: DNBSEQ-G400 paired end sequencing of SAMD00446160
1 DNBSEQ (DNBSEQ-G400) run: 33.9M spots, 10.2G bases, 6.3Gb downloads

Submitted by: NAGASAKI
Study: RNA-seq of Plasmodium knowlesi
PRJDB12907 • DRP008121 • All experiments • All runs
show Abstracthide Abstract
To evaluate if Plasmodium knowlesi-iRBCs could bind to human endothelial cells, we repeatedly panned monkey RBCs infected with a wild type P. knowlesi on HUVECs. We performed 2 selection experiments, exp-1 and exp-2. We obtained 2 cytoadherent P. knowlesi samples (6th pan and 8th pan) and 2 control samples (pre-1 and pre-2) in the exp-1, and 2 cytoadherent P. knowlesi samples (well-1 and well-2) and 1 control sample (pre-3) in the exp-2. Then we performed RNA-sequencing (RNA-seq) of these 7 samples at 3 different time points (4h, 8h, and 24h after invasion) to identify differentially expressed genes.
Sample: Cytoadherent P. knowlesi of well-1_3 months later at 4h
SAMD00446160 • DRS244805 • All experiments • All runs
Organism: Plasmodium knowlesi strain H
Library:
Instrument: DNBSEQ-G400
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: Oligo-dT
Layout: PAIRED
Construction protocol:
Spot descriptor:
1  forward151  reverse

Runs: 1 run, 33.9M spots, 10.2G bases, 6.3Gb
Run# of Spots# of BasesSizePublished
DRR35227733,925,10210.2G6.3Gb2022-07-04

ID:
22691942

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