U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from BioSample

SRX671598: GSM1467263: WT_3; Mus musculus; RNA-Seq
4 ILLUMINA (NextSeq 500) runs: 58.4M spots, 16.9G bases, 6.5Gb downloads

Submitted by: Gene Expression Omnibus (GEO)
Study: Regulation of the core pre-mRNA splicing machinery by MYC and PRMT5 is essential to sustain lymphomagenesis [B-cells]
show Abstracthide Abstract
Over-expressed MYC binds to virtually all active promoters within a cell, although with different binding affinities, and modulates gene expression, both positively and negatively. Here, we show that during lymphomagenesis in Eµ-myc transgenic mice, MYC directly up-regulates the transcription of the core snRNP assembly genes, including PRMT5, an arginine methyltransferase, that methylates Sm proteins as an early step in lymphomagenesis. This coordinated regulatory effect is direct and is critical for snRNP biogenesis, the maintenance of effective mRNA splicing and cellular viability in cycling cells, in either fibroblasts or B-cells. Overall design: mRNA profiles of wild type and pre-tumoral eu-myc mice by deep sequencing, in triplicate, using Illumina NextSeq 500
Sample: WT_3
SAMN02954003 • SRS676095 • All experiments • All runs
Organism: Mus musculus
Library:
Instrument: NextSeq 500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: RNA was isolated from cells using Trizol Reagent and Purelink RNA Mini Kit. Illumina TruSeq RNA Sample Prep Kit v2(Cat#FC-122-1001) was used with 1 ug of total RNA for the construction of sequencing libraries. Paired-end RNA library was prepared according to Illumina's standard protocol. Detailed experimental procedures and bioinformatics analysis can be found in the supplemental method section of the paper.
Links:
Runs: 4 runs, 58.4M spots, 16.9G bases, 6.5Gb
Run# of Spots# of BasesSizePublished
SRR153873214,575,0474.2G1.6Gb2015-05-20
SRR153873314,363,8284.2G1.6Gb2015-05-20
SRR153873414,917,3814.3G1.7Gb2015-05-20
SRR153873514,506,6064.2G1.6Gb2015-05-20

ID:
941709

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...