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SRX16106111: Target capture sequencing of wild caught Spinus atratus MSB:Bird:34099, NK169325
1 ILLUMINA (Illumina HiSeq 2500) run: 2.1M spots, 683.5M bases, 241.6Mb downloads

Design: target capture to enrich for seven avian hemoglobin loci and ~400 coding regions across the nuclear genome
Submitted by: University of California, Berkeley
Study: Avian hemoglobin variation in a widespread elevational generalist bird
show Abstracthide Abstract
We examined the signature of spatially-varying selection across two parallel elevational transects in all avian hemoglobin loci in a widespread elevational generalist, the Hooded Siskin (Spinus magellanicus). We compared the signature of selection at nonsynonymous sites in all seven hemoglobin loci to autosomal coding regions distributed across the genome using a custom target capture sequencing approach. We found three nonsynonymous sites in hemoglobin loci that show a signature of spatially varying selection with elevation, including in two loci which contribute to embryonic hemoglobin isoforms in passerines.
Sample:
SAMN29621371 • SRS13771437 • All experiments • All runs
Organism: Spinus atratus
Library:
Name: MSB:Bird:34099
Instrument: Illumina HiSeq 2500
Strategy: Targeted-Capture
Source: GENOMIC
Selection: other
Layout: PAIRED
Runs: 1 run, 2.1M spots, 683.5M bases, 241.6Mb
Run# of Spots# of BasesSizePublished
SRR200680402,135,835683.5M241.6Mb2022-09-20

ID:
22793959

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