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SRX16732161: GSM6418476: SWR_d6c8PGCLCs_rep2; Ceratotherium simum simum; RNA-Seq
1 ILLUMINA (NextSeq 550) run: 20.7M spots, 1.6G bases, 586.8Mb downloads

External Id: GSM6418476_r1
Submitted by: Developmental Stem Cell Biology, Kyushu University
Study: Robust induction of primordial germ cells of white rhinoceros on the brink of extinction
show Abstracthide Abstract
In vitro gametogenesis, the process of generating gametes from pluripotent cells in culture, is a powerful tool for improving our understanding of germ cell development as well as an alternative source of gametes.(1) Conservation of the northern white rhinoceros (NWR), a species for which only two females remain, would be a compelling application of in vitro gametogenesis as a gametes source. Here, we established a culture system that induces a robust number of primordial germ cell-like cells (PGCLCs) from pluripotent stem cells of the NWR and southern white rhinoceros (SWR), the closest species to the NWR. PGCLC differentiation from SWR embryonic stem cells is highly reliant on BMP and WNT signals, as observed in mice and humans, though the timing and duration of these signals need to be optimized for each species. Genetic analysis revealed that SOX17 is essential for SWR-PGCLC induction, as it is in humans. Under the defined condition, NWR induced pluripotent stem cells differentiated into PGCLCs whose transcriptome was highly similar to that of SWR-PGCLCs. We also identified cell surface markers, CD9 and ITGA6, that enabled us to isolate PGCLCs without genetic alteration in pluripotent stem cells. This study provides a first step toward production of NWR gametes in culture and understanding of the basic mechanism of PGC specification in a large animal. Overall design: Transcriptomes of embryonic stem cells, pre-induced cells, and primordial germ cell like cells of southern white rhinoceros and induced pluripotent stem cells, pre-induced cells, and primordial germ cell like cells of northern white rhinoceros.
Sample: SWR_d6c8PGCLCs_rep2
SAMN30052226 • SRS14360481 • All experiments • All runs
Library:
Name: GSM6418476
Instrument: NextSeq 550
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Construction protocol: Total RNAs were extracted and purified using an RNeasy Micro Kit, and mRNAs were isolated with the NEBNext poly(A) mRNA magnetic isolation module (NEB). Purified RNAs were subjected to library construction using a NEBNext Ultra Directional RNA Library Prep Kit for Illumina (NEB). cDNAs were enriched by 12-cycle PCR.
Runs: 1 run, 20.7M spots, 1.6G bases, 586.8Mb
Run# of Spots# of BasesSizePublished
SRR2071124520,671,4401.6G586.8Mb2022-10-18

ID:
23474889

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