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SRX17247066: GSM6504914: SD3 reduced pH; Sporolithon durum; RNA-Seq
1 ILLUMINA (Illumina NovaSeq 6000) run: 2.9M spots, 174.3M bases, 131.3Mb downloads

External Id: GSM6504914_r1
Submitted by: Science and Environment, Griffith University
Study: Transcriptomic responses of coralline algae
show Abstracthide Abstract
Crustose coralline algae (CCA) are calcifying red macroalgae that play important ecological roles including stabilisation of reef frameworks and provision of settlement cues for a range of marine invertebrates. Previous research into the responses of CCA to ocean warming (OW) and ocean acidification (OA) have found magnitude of effect to be species-specific. Response to OW and OA could be linked to divergent underlying molecular processes across species. Here we show Sporolithon durum, a species that exhibits low sensitivity to climate stressors, had little change in metabolic performance and did not significantly alter the expression of any genes when exposed to temperature and pH perturbations. In contrast, Porolithon onkodes, a major coral reef builder, reduced photosynthetic rates and had a labile transcriptomic response with over 400 significantly differentially expressed genes, with differential regulation of genes relating to physiological processes such as carbon acquisition and metabolism. The differential gene expression detected in P. onkodes implicates possible key metabolic pathways, including the pentose phosphate pathway, in the stress response of this species. We suggest S. durum is more resistant to OW and OA than P. onkodes, which demonstrated a high sensitivity to climate stressors and may have limited ability for acclimatisation. Understanding changes in gene expression in relation to physiological processes of CCA could help us understand and predict how different species will respond to, and persist in, future ocean conditions predicted for 2100. Overall design: Pigmented tissue of two coralline algae species, Porolithon onkodes and Sporolithon durum. Four treatments with 5 biological replicates per species per treatment.
Sample: SD3 reduced pH
SAMN30467714 • SRS14812179 • All experiments • All runs
Library:
Name: GSM6504914
Instrument: Illumina NovaSeq 6000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Construction protocol: Fragments of CCA were thoroughly cleaned prior to sampling for molecular analysis under a microscope and all epiphytes, as far as possible, were removed. CCA were rinsed with filtered seawater and RNAlater® and then blotted with a kimwipe to remove bacterial film. RNA was extracted following a modified TRIzol protocol. cDNA synthesis, library preparation, and sequencing followed the single-cell sequencing (CEL-Seq2) protocol detailed in Hashimonshony et al. 2016
Runs: 1 run, 2.9M spots, 174.3M bases, 131.3Mb
Run# of Spots# of BasesSizePublished
SRR212376442,905,474174.3M131.3Mb2022-08-26

ID:
24067566

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